Variant report

Variant	rs28367033
Chromosome Location	chr14:70418798-70418799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10132876	0.91[EUR][1000 genomes]
rs10140099	0.83[EUR][1000 genomes]
rs10149245	0.91[EUR][1000 genomes]
rs10149688	0.91[EUR][1000 genomes]
rs28569153	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70414800-70437400	Strong transcription	Hela-S3	cervix
2	chr14:70415400-70434400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:70415600-70419600	Weak transcription	HepG2	liver
4	chr14:70415800-70420000	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:70415800-70444600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:70416000-70418800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:70416000-70422600	Weak transcription	Brain Substantia Nigra	brain
8	chr14:70416200-70418800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:70416200-70418800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:70416200-70418800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:70416200-70421800	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:70416800-70419000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:70417000-70420000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:70417800-70422000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:70417800-70424000	Enhancers	Fetal Brain Male	brain
16	chr14:70418200-70421800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:70418400-70419000	Enhancers	Liver	Liver
18	chr14:70418400-70420000	Enhancers	Fetal Brain Female	brain
19	chr14:70418400-70423600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:70418600-70420000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:70418600-70420600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr14:70418600-70422600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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