Variant report

Variant	rs28369300
Chromosome Location	chr4:143640713-143640714
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143393131..143399799-chr4:143636317..143645681,15	MCF-7	breast:
2	chr4:143401960..143404960-chr4:143637401..143640738,3	MCF-7	breast:
3	chr4:143634044..143636846-chr4:143637396..143641073,3	MCF-7	breast:
4	chr4:143392644..143398601-chr4:143638137..143645320,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10003729	0.80[AFR][1000 genomes]
rs10015977	0.89[AFR][1000 genomes]
rs10023784	0.94[AFR][1000 genomes]
rs10033400	0.80[AFR][1000 genomes]
rs10033676	0.94[AFR][1000 genomes]
rs28391627	0.80[AFR][1000 genomes]
rs28436714	0.80[AFR][1000 genomes]
rs28478866	0.80[AFR][1000 genomes]
rs28529221	0.80[AFR][1000 genomes]
rs28715927	0.80[AFR][1000 genomes]
rs7656996	0.80[AFR][1000 genomes]
rs7697630	0.80[AFR][1000 genomes]
rs9999487	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
2	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143630800-143650200	Weak transcription	Aorta	Aorta
4	chr4:143635000-143648200	Weak transcription	Thymus	Thymus
5	chr4:143635600-143641000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:143636400-143641000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:143636600-143641000	Weak transcription	Primary T cells from cord blood	blood
8	chr4:143637200-143653000	Weak transcription	Left Ventricle	heart
9	chr4:143637800-143641000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:143639200-143641800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr4:143639600-143641400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:143639600-143641600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr4:143639600-143647000	Enhancers	Dnd41	blood
14	chr4:143640000-143641200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:143640000-143641400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr4:143640200-143641000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:143640200-143641000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:143640200-143641400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:143640200-143641800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:143640200-143642200	Enhancers	NHEK	skin
21	chr4:143640200-143642800	Enhancers	HMEC	breast
22	chr4:143640400-143640800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:143640600-143640800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr4:143640600-143641600	Enhancers	Primary hematopoietic stem cells	blood

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