The 2.0 version of rSNPBase

Variant report

Variant rs28370178
Chromosome Location chr1:223962919-223962920
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:223954800-223964000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:223956600-223963400 Strong transcription Primary T regulatory cells fromperipheralblood blood
3 chr1:223956600-223963600 Strong transcription Breast Myoepithelial Primary Cells Breast
4 chr1:223956600-223963600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:223956600-223963800 Strong transcription Primary T cells fromperipheralblood blood
6 chr1:223956600-223967000 Strong transcription Lung lung
7 chr1:223956600-223967200 Strong transcription Colonic Mucosa Colon
8 chr1:223956600-223968400 Strong transcription Fetal Brain Female brain
9 chr1:223956600-223969000 Strong transcription Cortex derived primary cultured neurospheres brain
10 chr1:223956600-223969000 Strong transcription Fetal Stomach stomach
11 chr1:223956600-224004600 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:223956600-224004600 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr1:223956800-223963000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr1:223956800-223963200 Strong transcription Primary T helper cells PMA-I stimulated --
15 chr1:223956800-223969000 Strong transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:223956800-223969200 Strong transcription Placenta Placenta
17 chr1:223956800-223974200 Strong transcription Primary T cells from cord blood blood
18 chr1:223956800-223974200 Strong transcription Liver Liver
19 chr1:223957000-223964000 Strong transcription Primary T killer naive cells fromperipheralblood blood
20 chr1:223957000-223983400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr1:223957200-223965000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:223957200-223968000 Strong transcription Brain Germinal Matrix brain
23 chr1:223957200-223968800 Strong transcription Primary T helper cells fromperipheralblood blood
24 chr1:223957200-223972800 Strong transcription Primary B cells from peripheral blood blood
25 chr1:223958400-223963000 Genic enhancers Skeletal Muscle Male skeletal muscle
26 chr1:223958400-223963800 Strong transcription Primary hematopoietic stem cells short term culture blood
27 chr1:223958800-223965200 Genic enhancers Fetal Muscle Leg muscle
28 chr1:223959200-223964200 Strong transcription Colon Smooth Muscle Colon
29 chr1:223959600-223966600 Weak transcription Fetal Brain Male brain
30 chr1:223959600-223969000 Strong transcription Skeletal Muscle Female skeletal muscle
31 chr1:223959800-223977600 Strong transcription iPS-20b Cell Line embryonic stem cell
32 chr1:223960000-223963800 Strong transcription Rectal Mucosa Donor 31 rectum
33 chr1:223960000-223964400 Genic enhancers HSMM muscle
34 chr1:223960000-223968600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr1:223960000-223969000 Strong transcription Fetal Kidney kidney
36 chr1:223960000-223972200 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr1:223960200-223964000 Strong transcription Sigmoid Colon Sigmoid Colon
38 chr1:223960200-223964000 Genic enhancers HUVEC blood vessel
39 chr1:223960200-223964800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:223960200-223970000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:223960200-223971800 Strong transcription Stomach Smooth Muscle stomach
42 chr1:223960200-223998600 Strong transcription Fetal Thymus thymus
43 chr1:223960200-224025400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
44 chr1:223960400-223964400 Genic enhancers HSMMtube muscle
45 chr1:223960400-223968800 Strong transcription Duodenum Smooth Muscle Duodenum
46 chr1:223960600-223967200 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:223960600-223986800 Strong transcription Primary neutrophils fromperipheralblood blood
48 chr1:223960600-223995200 Strong transcription HUES64 Cell Line embryonic stem cell
49 chr1:223960600-224001400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr1:223960800-223963000 Weak transcription Ovary ovary

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Last update: Aug 31, 2015