Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11564117	1.00[AFR][1000 genomes]
rs11564214	1.00[AFR][1000 genomes]
rs12423682	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12423983	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12425167	0.88[AMR][1000 genomes]
rs12426643	1.00[AFR][1000 genomes]
rs17458808	1.00[AFR][1000 genomes]
rs17461387	1.00[AFR][1000 genomes]
rs17483919	1.00[AFR][1000 genomes]
rs17559478	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17559800	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17560267	0.90[AMR][1000 genomes]
rs17560365	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1874558	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2173134	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28370602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28740171	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs535458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs549790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566044	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40337400-40350600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:40338000-40366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:40347800-40369800	Weak transcription	Pancreas	Pancrea
4	chr12:40348200-40361400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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