Variant report

Variant	rs2837187
Chromosome Location	chr21:41139574-41139575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10470189	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10470190	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs1077588	0.90[EUR][1000 genomes]
rs1077589	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1077590	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1077591	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1235475	0.81[ASN][1000 genomes]
rs1235476	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1235478	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12482872	0.81[ASN][1000 genomes]
rs12483010	0.82[ASN][1000 genomes]
rs12626544	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1571710	0.89[EUR][1000 genomes]
rs1571711	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs16998430	0.81[JPT][hapmap]
rs1734857	0.83[ASN][1000 genomes]
rs1734858	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1734859	0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs1735145	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1735146	0.80[ASN][1000 genomes]
rs1735147	0.80[ASN][1000 genomes]
rs1735149	0.82[ASN][1000 genomes]
rs1735151	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1888493	0.85[CHB][hapmap]
rs2205202	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2253741	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2253748	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2253751	0.83[ASN][1000 genomes]
rs2253752	0.83[ASN][1000 genomes]
rs2266513	0.81[ASN][1000 genomes]
rs2410180	0.81[ASN][1000 genomes]
rs2410181	0.83[ASN][1000 genomes]
rs2837149	0.82[ASN][1000 genomes]
rs2837150	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2837151	0.83[ASN][1000 genomes]
rs2837153	0.83[ASN][1000 genomes]
rs2837154	0.82[ASN][1000 genomes]
rs2837155	0.83[ASN][1000 genomes]
rs2837157	0.83[ASN][1000 genomes]
rs2837158	0.82[ASN][1000 genomes]
rs2837159	0.82[ASN][1000 genomes]
rs2837160	0.83[ASN][1000 genomes]
rs2837161	0.82[ASN][1000 genomes]
rs2837162	0.82[ASN][1000 genomes]
rs2837163	0.83[ASN][1000 genomes]
rs2837164	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2837165	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2837166	0.80[ASN][1000 genomes]
rs2837168	0.83[ASN][1000 genomes]
rs2837169	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2837170	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2837171	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2837172	0.83[ASN][1000 genomes]
rs2837173	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2837175	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs2837176	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs2837177	0.88[EUR][1000 genomes]
rs2837178	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs2837183	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs2837184	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2837190	0.81[JPT][hapmap]
rs2898385	0.82[ASN][1000 genomes]
rs2974990	0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2989331	0.83[ASN][1000 genomes]
rs388152	0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs388332	0.81[ASN][1000 genomes]
rs396774	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs415340	0.82[ASN][1000 genomes]
rs421549	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs431735	0.82[ASN][1000 genomes]
rs431767	0.94[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs443468	0.80[ASN][1000 genomes]
rs4816645	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4816648	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4816649	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4816650	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4816651	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4816652	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs4816653	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs4816655	0.83[ASN][1000 genomes]
rs4818085	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4818086	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4818090	0.82[ASN][1000 genomes]
rs4995787	0.82[ASN][1000 genomes]
rs6517561	0.82[ASN][1000 genomes]
rs6517562	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6517565	0.83[ASN][1000 genomes]
rs6517566	0.85[EUR][1000 genomes]
rs71316138	0.80[ASN][1000 genomes]
rs7275687	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7278720	0.83[ASN][1000 genomes]
rs7278858	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7282199	0.82[ASN][1000 genomes]
rs7282336	0.94[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7282400	0.82[ASN][1000 genomes]
rs7282589	0.81[ASN][1000 genomes]
rs7282623	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs731010	0.89[EUR][1000 genomes]
rs741867	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs744568	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9305678	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9305679	0.88[EUR][1000 genomes]
rs9753824	0.89[ASN][1000 genomes]
rs9753841	0.80[ASN][1000 genomes]
rs9980150	0.82[ASN][1000 genomes]
rs9983659	0.84[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1065086	chr21:41034806-41429078	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv544445	chr21:41034806-41429078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv834099	chr21:41076873-41206030	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41110000-41148400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:41136200-41143800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr21:41136800-41146000	Weak transcription	Placenta	Placenta
4	chr21:41137600-41152800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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