Variant report

Variant	rs2837255
Chromosome Location	chr21:41222121-41222122
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:41221313..41224011-chr21:41232632..41234576,2	MCF-7	breast:
2	chr21:41212294..41214986-chr21:41219882..41222782,2	MCF-7	breast:
3	chr21:41217185..41219061-chr21:41222120..41225163,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1018350	0.84[JPT][hapmap]
rs1018351	0.85[JPT][hapmap]
rs1118103	0.85[JPT][hapmap]
rs1571713	0.84[JPT][hapmap]
rs2178882	0.85[JPT][hapmap]
rs2837211	0.84[JPT][hapmap]
rs2837212	0.84[JPT][hapmap]
rs2837216	0.84[JPT][hapmap]
rs2837248	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2837250	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2898387	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs447480	0.99[ASN][1000 genomes]
rs455830	0.85[JPT][hapmap]
rs456522	0.85[JPT][hapmap]
rs456818	0.85[JPT][hapmap]
rs457569	0.85[JPT][hapmap]
rs460549	0.84[JPT][hapmap]
rs462555	0.84[JPT][hapmap]
rs463903	0.84[JPT][hapmap]
rs464201	0.83[JPT][hapmap]
rs464351	0.85[JPT][hapmap]
rs464574	0.85[JPT][hapmap]
rs464623	0.85[JPT][hapmap]
rs465258	0.84[JPT][hapmap]
rs466303	0.84[JPT][hapmap]
rs4816657	0.84[JPT][hapmap]
rs4816658	0.84[JPT][hapmap]
rs4818091	0.84[JPT][hapmap]
rs4818093	0.83[CHB][hapmap]
rs7277009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9975321	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9982911	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9983185	0.89[JPT][hapmap]
rs9984051	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1065086	chr21:41034806-41429078	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv544445	chr21:41034806-41429078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41213400-41222800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr21:41213600-41223600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr21:41218400-41222800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr21:41220200-41223400	Weak transcription	Pancreas	Pancrea
5	chr21:41220200-41223600	Weak transcription	Gastric	stomach
6	chr21:41221200-41224000	Enhancers	Fetal Muscle Leg	muscle
7	chr21:41221800-41224800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr21:41222000-41225000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr21:41222000-41232400	Weak transcription	Right Ventricle	heart

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