Variant report

Variant	rs28372551
Chromosome Location	chr4:142048098-142048099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10001083	1.00[AFR][1000 genomes]
rs10029462	0.88[AFR][1000 genomes]
rs13435113	0.92[AFR][1000 genomes]
rs28433132	0.92[AFR][1000 genomes]
rs28438876	0.88[AFR][1000 genomes]
rs28465245	0.88[AFR][1000 genomes]
rs28612386	0.92[AFR][1000 genomes]
rs28728280	0.91[AFR][1000 genomes]
rs9654251	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142038600-142052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:142039000-142049200	Weak transcription	Fetal Brain Female	brain
3	chr4:142039400-142051800	Weak transcription	Aorta	Aorta
4	chr4:142041000-142048600	Weak transcription	Adipose Nuclei	Adipose
5	chr4:142041000-142052200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:142042200-142048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:142042600-142048600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:142043600-142051800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:142044400-142051200	Weak transcription	Osteobl	bone
10	chr4:142044600-142051600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:142044800-142051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:142045800-142048800	Enhancers	Fetal Heart	heart
13	chr4:142045800-142049000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:142045800-142051200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:142045800-142051200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr4:142046400-142048200	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:142047000-142048600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:142047200-142048400	Bivalent Enhancer	Fetal Lung	lung
19	chr4:142047200-142048800	Weak transcription	Brain Substantia Nigra	brain
20	chr4:142047200-142049400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr4:142047200-142050200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr4:142047400-142048600	Enhancers	Psoas Muscle	Psoas
23	chr4:142047400-142048800	Enhancers	Right Ventricle	heart
24	chr4:142047400-142049000	Enhancers	Stomach Smooth Muscle	stomach
25	chr4:142047400-142049400	Enhancers	Left Ventricle	heart
26	chr4:142047400-142049600	Enhancers	Ovary	ovary
27	chr4:142047600-142048200	Enhancers	Brain Cingulate Gyrus	brain
28	chr4:142047600-142048400	Enhancers	Lung	lung
29	chr4:142047600-142048400	Enhancers	Pancreas	Pancrea
30	chr4:142047600-142048400	Enhancers	Spleen	Spleen
31	chr4:142047600-142048800	Enhancers	Right Atrium	heart
32	chr4:142047600-142049600	Enhancers	Fetal Stomach	stomach
33	chr4:142047600-142050600	Enhancers	Colon Smooth Muscle	Colon
34	chr4:142047800-142048200	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:142047800-142048400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr4:142047800-142048800	Weak transcription	Brain Anterior Caudate	brain
37	chr4:142048000-142048200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr4:142048000-142048400	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr4:142048000-142048600	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links