Variant report

Variant	rs28375846
Chromosome Location	chr2:210388425-210388426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60768840	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
2	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
3	chr2:210378800-210390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:210382200-210391600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:210383000-210391000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210384000-210388600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210386800-210389600	Enhancers	Fetal Brain Male	brain
8	chr2:210387000-210389000	Enhancers	Fetal Brain Female	brain
9	chr2:210387000-210391600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210387200-210389800	Enhancers	Brain Germinal Matrix	brain
11	chr2:210387600-210388800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:210387800-210388800	Enhancers	NHDF-Ad	bronchial
13	chr2:210387800-210392600	Enhancers	Primary B cells from peripheral blood	blood
14	chr2:210388000-210388600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:210388000-210389600	Enhancers	Brain Anterior Caudate	brain
16	chr2:210388000-210390200	Enhancers	Primary B cells from cord blood	blood
17	chr2:210388200-210389200	Enhancers	Brain Substantia Nigra	brain
18	chr2:210388200-210390000	Enhancers	HUVEC	blood vessel
19	chr2:210388200-210390800	Enhancers	GM12878-XiMat	blood
20	chr2:210388200-210391000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr2:210388400-210388600	Enhancers	NH-A	brain
22	chr2:210388400-210389000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr2:210388400-210390200	Weak transcription	Ovary	ovary
24	chr2:210388400-210392200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:210388400-210392200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:210388400-210402200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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