Variant report

Variant	rs28377535
Chromosome Location	chr9:17466802-17466803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10119881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12350770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1813291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58367658	1.00[EUR][1000 genomes]
rs58791247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60824077	1.00[EUR][1000 genomes]
rs7027305	1.00[AMR][1000 genomes]
rs73416465	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv892668	chr9:17371690-17532840	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892670	chr9:17378776-17507277	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv2422265	chr9:17396711-17598187	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv613698	chr9:17457854-17488111	Enhancers Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17411800-17481000	Weak transcription	Aorta	Aorta
2	chr9:17440400-17494600	Weak transcription	Left Ventricle	heart
3	chr9:17441200-17467000	Weak transcription	Adipose Nuclei	Adipose
4	chr9:17442000-17491800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:17442200-17467200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:17446000-17467400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:17448000-17503400	Weak transcription	Ovary	ovary
8	chr9:17448400-17496400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:17448600-17495800	Weak transcription	Dnd41	blood
10	chr9:17452800-17495600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:17453000-17472200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:17453000-17497000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:17453800-17504200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:17454000-17491800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:17455600-17503000	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:17457200-17477200	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:17457600-17469400	Weak transcription	Fetal Intestine Large	intestine
18	chr9:17457800-17475000	Weak transcription	Fetal Heart	heart
19	chr9:17458800-17500400	Weak transcription	HUVEC	blood vessel
20	chr9:17459000-17470000	Weak transcription	Osteobl	bone
21	chr9:17460600-17496200	Weak transcription	HSMM	muscle
22	chr9:17461400-17472000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:17462400-17468600	Weak transcription	A549	lung
24	chr9:17464600-17471000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:17465000-17470200	Strong transcription	Liver	Liver
26	chr9:17465000-17487400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr9:17465400-17467600	Weak transcription	HMEC	breast
28	chr9:17465400-17469600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:17465800-17468000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr9:17465800-17468200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr9:17466000-17468200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr9:17466000-17468400	Weak transcription	Placenta	Placenta
33	chr9:17466200-17468800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:17466600-17467600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:17466800-17467200	Strong transcription	NHDF-Ad	bronchial
36	chr9:17466800-17468200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:17466800-17468200	Strong transcription	Primary hematopoietic stem cells	blood
38	chr9:17466800-17470400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:17466800-17470400	Strong transcription	Fetal Lung	lung

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