Variant report

Variant	rs28379655
Chromosome Location	chr8:125624609-125624610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125624289..125626710-chr8:125861168..125862907,2	MCF-7	breast:
2	chr8:125622218..125624702-chr8:126034880..126037308,2	K562	blood:
3	chr8:125623069..125624735-chr8:125628903..125630679,2	K562	blood:
4	chr8:125623064..125627321-chr8:125629819..125632222,6	MCF-7	breast:
5	chr8:125623094..125625330-chr8:125984669..125986468,2	MCF-7	breast:
6	chr8:125606789..125608320-chr8:125623030..125625439,2	MCF-7	breast:
7	chr8:125621974..125624358-chr8:125624517..125626808,3	MCF-7	breast:
8	chr8:125617349..125622220-chr8:125623810..125627112,5	K562	blood:
9	chr8:125623032..125625031-chr8:125629309..125631015,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction
ENSG00000180938	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10505448	0.87[EUR][1000 genomes]
rs11994513	0.87[EUR][1000 genomes]
rs11994520	0.87[EUR][1000 genomes]
rs11995300	0.87[EUR][1000 genomes]
rs1808600	0.86[EUR][1000 genomes]
rs2014895	0.84[EUR][1000 genomes]
rs4870908	0.85[EUR][1000 genomes]
rs4870910	0.87[EUR][1000 genomes]
rs4870911	0.87[EUR][1000 genomes]
rs4870912	0.87[EUR][1000 genomes]
rs4870913	0.87[EUR][1000 genomes]
rs4871516	0.87[EUR][1000 genomes]
rs4871517	0.87[EUR][1000 genomes]
rs62530668	0.84[EUR][1000 genomes]
rs62530669	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62530670	0.87[EUR][1000 genomes]
rs6984853	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6989466	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs752492	0.86[EUR][1000 genomes]
rs919544	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9297695	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297696	0.87[EUR][1000 genomes]
rs9987267	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9987275	0.87[EUR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:125614000-125628800	Enhancers	Liver	Liver
3	chr8:125614400-125627400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:125614800-125625600	Enhancers	Fetal Muscle Leg	muscle
5	chr8:125616000-125630200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:125617400-125626000	Weak transcription	Fetal Intestine Small	intestine
7	chr8:125617400-125626200	Enhancers	Fetal Thymus	thymus
8	chr8:125617600-125625000	Enhancers	Fetal Brain Male	brain
9	chr8:125617600-125627000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:125617600-125627400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:125617600-125631400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr8:125617800-125628600	Enhancers	Primary B cells from peripheral blood	blood
13	chr8:125618000-125626200	Enhancers	Thymus	Thymus
14	chr8:125618000-125632800	Weak transcription	HUVEC	blood vessel
15	chr8:125618000-125640400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr8:125618600-125626200	Enhancers	Fetal Heart	heart
17	chr8:125618800-125626200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr8:125619200-125630800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:125619200-125649000	Weak transcription	Colonic Mucosa	Colon
20	chr8:125619400-125627200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:125619400-125627200	Weak transcription	HepG2	liver
22	chr8:125619400-125628400	Weak transcription	Fetal Kidney	kidney
23	chr8:125620800-125625200	Weak transcription	Placenta	Placenta
24	chr8:125620800-125625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:125620800-125625600	Weak transcription	HMEC	breast
26	chr8:125621000-125625200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr8:125621200-125626000	Enhancers	Left Ventricle	heart
28	chr8:125621200-125627600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:125621600-125626000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr8:125621800-125625000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr8:125621800-125625800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:125621800-125626000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:125621800-125631400	Weak transcription	Esophagus	oesophagus
34	chr8:125622000-125626200	Enhancers	Brain Angular Gyrus	brain
35	chr8:125622200-125626000	Enhancers	Brain Anterior Caudate	brain
36	chr8:125622400-125626000	Enhancers	Brain Substantia Nigra	brain
37	chr8:125622600-125626000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:125622800-125626200	Enhancers	Psoas Muscle	Psoas
39	chr8:125622800-125627000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:125623000-125625200	Enhancers	Spleen	Spleen
41	chr8:125623000-125627000	Weak transcription	K562	blood
42	chr8:125623000-125627400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr8:125623200-125625000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr8:125623200-125625600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:125623200-125628400	Weak transcription	Fetal Lung	lung
46	chr8:125623200-125630800	Weak transcription	Pancreas	Pancrea
47	chr8:125623200-125631600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:125623400-125625600	Weak transcription	Adipose Nuclei	Adipose
49	chr8:125623400-125625600	Enhancers	Fetal Brain Female	brain
50	chr8:125623400-125630800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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