Variant report

Variant	rs283798
Chromosome Location	chr15:76769719-76769720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10220790	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12708522	0.83[AMR][1000 genomes]
rs1499019	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs1499020	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs1499022	0.83[AMR][1000 genomes]
rs157764	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157765	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157767	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157770	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs157771	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs157772	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs157773	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs157774	0.83[AMR][1000 genomes]
rs157781	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157782	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157784	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157786	0.83[AMR][1000 genomes]
rs157792	0.83[AMR][1000 genomes]
rs157793	0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs166905	0.83[AMR][1000 genomes]
rs166932	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs185860	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1878877	0.83[AMR][1000 genomes]
rs190782	0.83[AMR][1000 genomes]
rs2037306	0.83[AMR][1000 genomes]
rs2244050	0.83[AMR][1000 genomes]
rs2247488	0.83[AMR][1000 genomes]
rs2404735	0.83[AMR][1000 genomes]
rs2439983	0.83[AMR][1000 genomes]
rs2454452	0.83[YRI][hapmap]
rs2456030	0.83[AMR][1000 genomes]
rs2456032	0.83[AMR][1000 genomes]
rs2456034	0.83[AMR][1000 genomes]
rs2456035	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2456036	0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2456037	0.83[AMR][1000 genomes]
rs2456059	0.83[AMR][1000 genomes]
rs2456062	0.83[AMR][1000 genomes]
rs2456064	0.83[AMR][1000 genomes]
rs2456068	0.83[AMR][1000 genomes]
rs2456069	0.83[AMR][1000 genomes]
rs2456077	0.83[AMR][1000 genomes]
rs2459364	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2460141	0.83[AMR][1000 genomes]
rs2460149	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2460157	0.83[AMR][1000 genomes]
rs2460159	0.83[AMR][1000 genomes]
rs2468117	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs2468125	0.83[AMR][1000 genomes]
rs2469209	0.83[AMR][1000 genomes]
rs2469217	0.83[AMR][1000 genomes]
rs2469218	0.83[AMR][1000 genomes]
rs2469219	0.83[AMR][1000 genomes]
rs2469220	0.83[AMR][1000 genomes]
rs2469221	0.83[AMR][1000 genomes]
rs2469223	0.83[AMR][1000 genomes]
rs2469240	0.83[AMR][1000 genomes]
rs2469243	0.83[AMR][1000 genomes]
rs2469537	0.83[AMR][1000 genomes]
rs2469545	0.83[AMR][1000 genomes]
rs2469546	0.83[AMR][1000 genomes]
rs2469549	0.83[AMR][1000 genomes]
rs2469550	0.83[AMR][1000 genomes]
rs2469551	0.83[AMR][1000 genomes]
rs2469553	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2469572	0.83[AMR][1000 genomes]
rs2469574	0.83[AMR][1000 genomes]
rs2516308	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2585728	0.83[AMR][1000 genomes]
rs279991	0.83[AMR][1000 genomes]
rs279993	0.83[AMR][1000 genomes]
rs279994	0.83[AMR][1000 genomes]
rs279995	0.83[AMR][1000 genomes]
rs280019	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs283786	0.83[AMR][1000 genomes]
rs283788	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283790	0.83[AMR][1000 genomes]
rs283792	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283794	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283797	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283800	0.83[AMR][1000 genomes]
rs284879	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284882	0.83[AMR][1000 genomes]
rs284887	0.83[AMR][1000 genomes]
rs284888	0.83[AMR][1000 genomes]
rs284889	0.83[AMR][1000 genomes]
rs284890	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284894	0.90[AFR][1000 genomes]
rs284896	1.00[YRI][hapmap]
rs284900	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938692	0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938693	0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938694	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938696	0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938698	0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2944379	0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2944380	0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2948702	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2956872	0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957558	0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957608	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957609	0.94[YRI][hapmap]
rs415439	0.83[AMR][1000 genomes]
rs416812	0.90[AFR][1000 genomes]
rs426225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886797	0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs542148	0.83[AMR][1000 genomes]
rs560598	0.83[AMR][1000 genomes]
rs598011	0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6495202	0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs654416	0.83[AMR][1000 genomes]
rs7164815	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8040818	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs937734	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
2	chr15:76759800-76770400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:76760000-76772600	Weak transcription	GM12878-XiMat	blood
4	chr15:76760400-76773800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:76762000-76771400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:76762800-76771200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:76763000-76795000	Weak transcription	Primary B cells from cord blood	blood
8	chr15:76763200-76770200	Weak transcription	Adipose Nuclei	Adipose
9	chr15:76763600-76775200	Weak transcription	Liver	Liver

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