Variant report

Variant	rs28398187
Chromosome Location	chr8:11011895-11011896
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11011361..11013679-chr8:11086642..11088741,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10090120	0.80[AFR][1000 genomes]
rs10094029	0.83[AFR][1000 genomes]
rs10094620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096326	1.00[AMR][1000 genomes]
rs10097387	1.00[AMR][1000 genomes]
rs10100837	1.00[AMR][1000 genomes]
rs10103361	1.00[AMR][1000 genomes]
rs10105182	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106007	1.00[AMR][1000 genomes]
rs10106157	1.00[AMR][1000 genomes]
rs10106838	1.00[AMR][1000 genomes]
rs10107951	1.00[AMR][1000 genomes]
rs10109455	1.00[AMR][1000 genomes]
rs10109542	1.00[AMR][1000 genomes]
rs10481453	1.00[AMR][1000 genomes]
rs17152810	1.00[AMR][1000 genomes]
rs17152846	1.00[AMR][1000 genomes]
rs17152847	1.00[AMR][1000 genomes]
rs17152852	1.00[AMR][1000 genomes]
rs17152856	1.00[AMR][1000 genomes]
rs28530758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28588681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28601819	1.00[AMR][1000 genomes]
rs4401812	1.00[AMR][1000 genomes]
rs4415276	1.00[AMR][1000 genomes]
rs56021916	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56387861	1.00[AMR][1000 genomes]
rs56759377	1.00[AMR][1000 genomes]
rs57861728	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57911758	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58893927	1.00[AMR][1000 genomes]
rs60530116	1.00[AMR][1000 genomes]
rs60859757	1.00[AMR][1000 genomes]
rs61484474	1.00[AMR][1000 genomes]
rs61524162	1.00[AMR][1000 genomes]
rs7010804	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7015231	1.00[AMR][1000 genomes]
rs73530537	1.00[AMR][1000 genomes]
rs73530569	1.00[AMR][1000 genomes]
rs73530600	1.00[AMR][1000 genomes]
rs73539402	1.00[AMR][1000 genomes]
rs73541207	1.00[AMR][1000 genomes]
rs73541222	1.00[AMR][1000 genomes]
rs73541224	1.00[AMR][1000 genomes]
rs73541227	1.00[AMR][1000 genomes]
rs73541254	1.00[AMR][1000 genomes]
rs73543362	1.00[AMR][1000 genomes]
rs73543365	1.00[AMR][1000 genomes]
rs73545491	1.00[AMR][1000 genomes]
rs73665013	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7814341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	esv275517	chr8:11009873-11016516	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10966400-11026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:10989600-11014200	Weak transcription	Pancreas	Pancrea
3	chr8:10997200-11021000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:10997400-11017400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:10999400-11021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:11001600-11021000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr8:11002800-11022000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:11005000-11015800	Weak transcription	GM12878-XiMat	blood
9	chr8:11006800-11012600	Weak transcription	HSMMtube	muscle
10	chr8:11006800-11026200	Weak transcription	HSMM	muscle
11	chr8:11009200-11021000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:11009200-11024800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:11009800-11021400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:11010200-11014400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:11011200-11012000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr8:11011800-11012000	Enhancers	Gastric	stomach
17	chr8:11011800-11012000	Bivalent Enhancer	Left Ventricle	heart

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