Variant report

Variant	rs28400370
Chromosome Location	chr8:62835103-62835104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62823240..62824957-chr8:62833824..62836674,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASPH-7	chr8:62834214-62836877	ucscGeneNc_uc003xut_2

Variant related genes	Relation type
ENSG00000253544	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10111776	0.83[EUR][1000 genomes]
rs1400499	0.85[EUR][1000 genomes]
rs1516996	0.80[EUR][1000 genomes]
rs1516998	0.80[EUR][1000 genomes]
rs1516999	0.80[EUR][1000 genomes]
rs1607124	0.85[EUR][1000 genomes]
rs1607126	0.82[EUR][1000 genomes]
rs168252	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs180751	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1850369	0.83[EUR][1000 genomes]
rs1966106	0.85[EUR][1000 genomes]
rs237413	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28377818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28379606	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs344200	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344203	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344204	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs344206	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs344207	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344209	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344210	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344219	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344220	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344230	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344231	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344232	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344233	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344234	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344236	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344238	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344240	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344241	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344242	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344248	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs344251	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344252	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs344254	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344270	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344272	0.89[EUR][1000 genomes]
rs344273	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344274	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344307	0.98[EUR][1000 genomes]
rs344310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35594910	0.83[EUR][1000 genomes]
rs58080416	0.80[EUR][1000 genomes]
rs58587861	0.80[EUR][1000 genomes]
rs58710029	0.80[EUR][1000 genomes]
rs60415651	0.80[EUR][1000 genomes]
rs60520860	0.80[EUR][1000 genomes]
rs62135	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6471975	0.80[EUR][1000 genomes]
rs679344	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs681078	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73255147	0.80[EUR][1000 genomes]
rs73255155	0.80[EUR][1000 genomes]
rs73255157	0.80[EUR][1000 genomes]
rs73255189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73682603	0.80[EUR][1000 genomes]
rs73685158	0.80[EUR][1000 genomes]
rs73685159	0.80[EUR][1000 genomes]
rs7821502	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv611427	chr8:62733267-62848952	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831338	chr8:62736394-62913048	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1032414	chr8:62789246-62861376	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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