Variant report

Variant	rs28406982
Chromosome Location	chr14:55447690-55447691
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55367948..55370515-chr14:55445073..55448376,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10130198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142619	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150556	0.87[AFR][1000 genomes]
rs12323365	1.00[AMR][1000 genomes]
rs28414866	0.87[AFR][1000 genomes]
rs28513529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706216	0.87[AFR][1000 genomes]
rs28719471	0.84[AFR][1000 genomes]
rs9323273	0.87[AFR][1000 genomes]
rs9323274	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55403000-55449000	Weak transcription	Gastric	stomach
2	chr14:55411000-55477000	Weak transcription	Left Ventricle	heart
3	chr14:55412400-55453400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:55415200-55450000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:55418600-55492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:55419800-55480400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:55420000-55471600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:55421800-55481400	Weak transcription	Placenta	Placenta
9	chr14:55421800-55492800	Weak transcription	Aorta	Aorta
10	chr14:55422400-55492400	Weak transcription	Fetal Kidney	kidney
11	chr14:55424200-55476800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:55427200-55477400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr14:55428400-55457800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:55428400-55463000	Weak transcription	Esophagus	oesophagus
15	chr14:55428400-55471200	Weak transcription	Brain Germinal Matrix	brain
16	chr14:55428400-55471400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:55429000-55449000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:55429000-55492400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:55429400-55457400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:55429600-55452000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:55429600-55479000	Weak transcription	Fetal Brain Female	brain
22	chr14:55429800-55453800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr14:55429800-55466600	Weak transcription	Primary T cells from cord blood	blood
24	chr14:55430400-55484000	Weak transcription	Lung	lung
25	chr14:55430600-55449000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:55432000-55453200	Weak transcription	K562	blood
27	chr14:55432400-55449000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:55432600-55449600	Weak transcription	Thymus	Thymus
29	chr14:55433600-55451400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:55434000-55492800	Weak transcription	Primary B cells from cord blood	blood
31	chr14:55434200-55486800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr14:55437600-55483600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:55438400-55451200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:55438600-55490200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:55439400-55460000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:55439400-55485600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr14:55439400-55490200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:55439600-55450600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:55439800-55479400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:55440200-55464400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr14:55441400-55460400	Strong transcription	Dnd41	blood
42	chr14:55441800-55448400	Weak transcription	Liver	Liver
43	chr14:55442200-55492800	Weak transcription	Fetal Intestine Large	intestine
44	chr14:55442600-55451600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:55442600-55480600	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr14:55443200-55453000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr14:55443200-55453200	Weak transcription	HMEC	breast
48	chr14:55443200-55471200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:55443200-55481200	Weak transcription	Pancreas	Pancrea
50	chr14:55443400-55449200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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