Variant report

Variant	rs28407009
Chromosome Location	chr8:130322324-130322325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10088168	1.00[AMR][1000 genomes]
rs10093139	1.00[AMR][1000 genomes]
rs10094829	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111678	1.00[AMR][1000 genomes]
rs16904063	1.00[AMR][1000 genomes]
rs28402714	1.00[AMR][1000 genomes]
rs28408972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28459879	1.00[AMR][1000 genomes]
rs28462094	1.00[AMR][1000 genomes]
rs28485605	1.00[AMR][1000 genomes]
rs28493748	1.00[AMR][1000 genomes]
rs28515874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28534900	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28613417	1.00[AMR][1000 genomes]
rs28637039	1.00[AMR][1000 genomes]
rs28717384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28809896	1.00[AMR][1000 genomes]
rs28847054	1.00[AMR][1000 genomes]
rs73390066	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130315600-130328200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130316600-130325400	Weak transcription	Fetal Thymus	thymus
3	chr8:130319200-130326200	Weak transcription	Thymus	Thymus
4	chr8:130322200-130322400	ZNF genes & repeats	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links