Variant report

Variant	rs2840992
Chromosome Location	chr6:56017977-56017978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 222 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:219)

rs_ID	r²[population]
rs1028390	0.87[ASN][1000 genomes]
rs10456726	0.84[ASN][1000 genomes]
rs10484704	0.94[ASN][1000 genomes]
rs10807507	0.87[ASN][1000 genomes]
rs10807508	0.87[ASN][1000 genomes]
rs10807510	0.94[ASN][1000 genomes]
rs10948974	0.94[ASN][1000 genomes]
rs10948975	0.94[ASN][1000 genomes]
rs12154066	0.94[ASN][1000 genomes]
rs12189567	0.87[ASN][1000 genomes]
rs12189571	0.87[ASN][1000 genomes]
rs12189737	0.85[ASN][1000 genomes]
rs12190671	0.90[ASN][1000 genomes]
rs12190695	0.87[ASN][1000 genomes]
rs12190930	0.90[ASN][1000 genomes]
rs12191865	0.86[ASN][1000 genomes]
rs12191931	0.94[ASN][1000 genomes]
rs12192012	0.90[ASN][1000 genomes]
rs12192490	0.87[ASN][1000 genomes]
rs12192902	0.87[ASN][1000 genomes]
rs12193911	0.90[ASN][1000 genomes]
rs12194051	0.94[ASN][1000 genomes]
rs12194192	0.87[ASN][1000 genomes]
rs12194733	0.87[ASN][1000 genomes]
rs12194916	0.87[ASN][1000 genomes]
rs12194997	0.90[ASN][1000 genomes]
rs12195340	0.90[ASN][1000 genomes]
rs12196038	0.87[ASN][1000 genomes]
rs12196050	0.90[ASN][1000 genomes]
rs12196213	0.87[ASN][1000 genomes]
rs12196526	0.87[ASN][1000 genomes]
rs12196670	0.87[ASN][1000 genomes]
rs12196709	0.87[ASN][1000 genomes]
rs12196860	0.87[ASN][1000 genomes]
rs12197951	0.87[ASN][1000 genomes]
rs12198225	0.87[ASN][1000 genomes]
rs12198637	0.90[ASN][1000 genomes]
rs12198686	0.87[ASN][1000 genomes]
rs12199385	0.87[ASN][1000 genomes]
rs12200525	0.90[ASN][1000 genomes]
rs12200667	0.90[ASN][1000 genomes]
rs12201286	0.83[ASN][1000 genomes]
rs12201373	0.94[ASN][1000 genomes]
rs12201413	0.87[ASN][1000 genomes]
rs12201429	0.84[ASN][1000 genomes]
rs12201485	0.94[ASN][1000 genomes]
rs12201514	0.94[ASN][1000 genomes]
rs12201531	0.87[ASN][1000 genomes]
rs12203286	0.94[ASN][1000 genomes]
rs12203464	0.87[ASN][1000 genomes]
rs12203468	0.80[ASN][1000 genomes]
rs12203653	0.90[ASN][1000 genomes]
rs12203768	0.90[ASN][1000 genomes]
rs12203922	0.94[ASN][1000 genomes]
rs12203966	0.94[ASN][1000 genomes]
rs12204017	0.88[ASN][1000 genomes]
rs12204069	0.92[ASN][1000 genomes]
rs12204789	0.87[ASN][1000 genomes]
rs12205230	0.94[ASN][1000 genomes]
rs12205653	0.90[ASN][1000 genomes]
rs12205903	0.90[ASN][1000 genomes]
rs12206920	0.90[ASN][1000 genomes]
rs12207120	0.87[ASN][1000 genomes]
rs12207611	0.90[ASN][1000 genomes]
rs12207665	0.94[ASN][1000 genomes]
rs12207715	0.85[ASN][1000 genomes]
rs12208500	0.87[ASN][1000 genomes]
rs12208615	0.87[ASN][1000 genomes]
rs12208823	0.90[ASN][1000 genomes]
rs12208954	0.87[ASN][1000 genomes]
rs12209003	0.94[ASN][1000 genomes]
rs12209120	0.94[ASN][1000 genomes]
rs12209185	0.94[ASN][1000 genomes]
rs12209192	0.88[ASN][1000 genomes]
rs12209420	0.87[ASN][1000 genomes]
rs12209464	0.90[ASN][1000 genomes]
rs12209509	0.90[ASN][1000 genomes]
rs12209529	0.87[ASN][1000 genomes]
rs12210228	0.90[ASN][1000 genomes]
rs12210402	0.87[ASN][1000 genomes]
rs12210468	0.85[ASN][1000 genomes]
rs12210901	0.94[ASN][1000 genomes]
rs12211103	0.88[ASN][1000 genomes]
rs12211223	0.88[ASN][1000 genomes]
rs12212032	0.94[ASN][1000 genomes]
rs12212135	0.90[ASN][1000 genomes]
rs12212143	0.90[ASN][1000 genomes]
rs12212211	0.94[ASN][1000 genomes]
rs12212998	0.87[ASN][1000 genomes]
rs12213291	0.87[ASN][1000 genomes]
rs12213571	0.87[ASN][1000 genomes]
rs12214519	0.90[ASN][1000 genomes]
rs12214559	0.90[ASN][1000 genomes]
rs12214594	0.94[ASN][1000 genomes]
rs12214662	0.90[ASN][1000 genomes]
rs12214918	0.94[ASN][1000 genomes]
rs12215027	0.94[ASN][1000 genomes]
rs12215913	0.94[ASN][1000 genomes]
rs12216314	0.94[ASN][1000 genomes]
rs12216538	0.87[ASN][1000 genomes]
rs1555095	0.94[ASN][1000 genomes]
rs1555096	0.94[ASN][1000 genomes]
rs16887614	0.97[EUR][1000 genomes]
rs16887615	0.97[EUR][1000 genomes]
rs17218267	0.87[ASN][1000 genomes]
rs17218309	0.87[ASN][1000 genomes]
rs17218770	0.87[ASN][1000 genomes]
rs17219028	0.94[ASN][1000 genomes]
rs17219063	0.94[ASN][1000 genomes]
rs17219126	0.92[ASN][1000 genomes]
rs17219382	0.94[ASN][1000 genomes]
rs17221026	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17223058	0.90[EUR][1000 genomes]
rs17683841	0.87[ASN][1000 genomes]
rs17683846	0.87[ASN][1000 genomes]
rs17683955	0.87[ASN][1000 genomes]
rs17751067	0.87[ASN][1000 genomes]
rs17751085	0.87[ASN][1000 genomes]
rs17751114	0.88[ASN][1000 genomes]
rs17751143	0.87[ASN][1000 genomes]
rs17817730	0.87[ASN][1000 genomes]
rs17818151	0.87[ASN][1000 genomes]
rs17818561	0.94[ASN][1000 genomes]
rs17818687	0.94[ASN][1000 genomes]
rs17819585	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17819753	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17819824	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1925169	0.94[ASN][1000 genomes]
rs1925171	0.94[ASN][1000 genomes]
rs1925172	0.92[ASN][1000 genomes]
rs1925173	0.94[ASN][1000 genomes]
rs1925178	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2076474	0.94[ASN][1000 genomes]
rs2076475	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2143359	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2876629	0.90[ASN][1000 genomes]
rs28808332	0.90[ASN][1000 genomes]
rs28844387	0.94[ASN][1000 genomes]
rs34910254	0.90[ASN][1000 genomes]
rs35471617	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3857610	0.94[ASN][1000 genomes]
rs3950155	0.87[ASN][1000 genomes]
rs41271844	0.94[ASN][1000 genomes]
rs41464152	0.94[ASN][1000 genomes]
rs4295483	0.90[ASN][1000 genomes]
rs4336432	0.87[ASN][1000 genomes]
rs4388288	0.87[ASN][1000 genomes]
rs4469280	0.87[ASN][1000 genomes]
rs4482975	0.87[ASN][1000 genomes]
rs4544908	0.87[ASN][1000 genomes]
rs57122743	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59186267	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60739862	0.94[ASN][1000 genomes]
rs60913237	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61200368	0.87[ASN][1000 genomes]
rs62404861	0.87[ASN][1000 genomes]
rs62404862	0.87[ASN][1000 genomes]
rs62404863	0.87[ASN][1000 genomes]
rs62404865	0.87[ASN][1000 genomes]
rs62404866	0.87[ASN][1000 genomes]
rs62404867	0.87[ASN][1000 genomes]
rs62404868	0.87[ASN][1000 genomes]
rs62404869	0.87[ASN][1000 genomes]
rs62404893	0.90[ASN][1000 genomes]
rs62404894	0.90[ASN][1000 genomes]
rs62404895	0.90[ASN][1000 genomes]
rs62404896	0.90[ASN][1000 genomes]
rs62404897	0.90[ASN][1000 genomes]
rs62404898	0.90[ASN][1000 genomes]
rs62404900	0.90[ASN][1000 genomes]
rs62406153	0.87[ASN][1000 genomes]
rs62406154	0.87[ASN][1000 genomes]
rs62406155	0.87[ASN][1000 genomes]
rs62406156	0.87[ASN][1000 genomes]
rs62406157	0.87[ASN][1000 genomes]
rs62411452	0.90[ASN][1000 genomes]
rs62411453	0.90[ASN][1000 genomes]
rs62411455	0.90[ASN][1000 genomes]
rs62411456	0.90[ASN][1000 genomes]
rs62411457	0.90[ASN][1000 genomes]
rs62411458	0.90[ASN][1000 genomes]
rs62412799	0.90[ASN][1000 genomes]
rs62412800	0.90[ASN][1000 genomes]
rs62412801	0.90[ASN][1000 genomes]
rs62412803	0.94[ASN][1000 genomes]
rs62412804	0.96[ASN][1000 genomes]
rs62412805	0.92[ASN][1000 genomes]
rs62412806	0.94[ASN][1000 genomes]
rs62412807	0.94[ASN][1000 genomes]
rs62412808	0.94[ASN][1000 genomes]
rs62412809	0.94[ASN][1000 genomes]
rs62412810	0.94[ASN][1000 genomes]
rs62412811	0.94[ASN][1000 genomes]
rs62412812	0.89[ASN][1000 genomes]
rs62412813	0.94[ASN][1000 genomes]
rs62412814	0.94[ASN][1000 genomes]
rs62412815	0.94[ASN][1000 genomes]
rs62412818	0.94[ASN][1000 genomes]
rs62412819	0.94[ASN][1000 genomes]
rs62412820	0.94[ASN][1000 genomes]
rs62412821	0.94[ASN][1000 genomes]
rs62412822	0.94[ASN][1000 genomes]
rs62413462	0.94[ASN][1000 genomes]
rs62413465	0.94[ASN][1000 genomes]
rs62413467	0.94[ASN][1000 genomes]
rs62413469	0.94[ASN][1000 genomes]
rs62413470	0.94[ASN][1000 genomes]
rs62413471	0.90[ASN][1000 genomes]
rs62413472	0.94[ASN][1000 genomes]
rs62413473	0.94[ASN][1000 genomes]
rs62413476	0.92[ASN][1000 genomes]
rs62413477	0.92[ASN][1000 genomes]
rs62413478	0.94[ASN][1000 genomes]
rs62413479	0.94[ASN][1000 genomes]
rs62413547	0.94[ASN][1000 genomes]
rs7450492	0.87[ASN][1000 genomes]
rs7454056	0.91[ASN][1000 genomes]
rs763966	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9475577	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
3	chr6:55999000-56021200	Weak transcription	Aorta	Aorta
4	chr6:56006600-56018600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:56011600-56018600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:56011600-56018800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:56014800-56018200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:56016600-56018600	Strong transcription	Fetal Muscle Trunk	muscle
10	chr6:56016600-56019200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:56016800-56019400	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr6:56017600-56018400	Weak transcription	Fetal Lung	lung
13	chr6:56017800-56021000	Weak transcription	Fetal Stomach	stomach

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