Variant report

Variant	rs2840995
Chromosome Location	chr6:56055928-56055929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1012257	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1022539	0.93[ASN][1000 genomes]
rs1033478	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12190324	0.93[ASN][1000 genomes]
rs12199712	0.93[ASN][1000 genomes]
rs12199742	0.93[ASN][1000 genomes]
rs1319111	0.93[ASN][1000 genomes]
rs1319112	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13193925	0.91[ASN][1000 genomes]
rs13209836	0.93[ASN][1000 genomes]
rs1925138	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925139	0.93[ASN][1000 genomes]
rs1925141	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1925143	0.93[ASN][1000 genomes]
rs1925144	0.93[ASN][1000 genomes]
rs1925147	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1925149	0.83[ASN][1000 genomes]
rs1925179	0.93[ASN][1000 genomes]
rs1925180	0.91[ASN][1000 genomes]
rs1925181	0.93[ASN][1000 genomes]
rs1925185	0.91[ASN][1000 genomes]
rs1925186	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1925189	0.93[ASN][1000 genomes]
rs1980487	0.93[ASN][1000 genomes]
rs2038149	0.93[ASN][1000 genomes]
rs2328675	0.96[ASN][1000 genomes]
rs2328677	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2397204	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2397206	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2397208	0.93[ASN][1000 genomes]
rs2397209	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2745369	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2764052	0.85[ASN][1000 genomes]
rs2764055	0.82[ASN][1000 genomes]
rs2764056	0.82[ASN][1000 genomes]
rs2841000	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2841007	0.85[ASN][1000 genomes]
rs2876630	0.93[ASN][1000 genomes]
rs3846920	0.85[ASN][1000 genomes]
rs3846921	0.84[EUR][1000 genomes]
rs3846922	0.93[ASN][1000 genomes]
rs3846923	0.93[ASN][1000 genomes]
rs3846924	0.90[ASN][1000 genomes]
rs3846925	0.90[ASN][1000 genomes]
rs3857611	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3857612	0.90[ASN][1000 genomes]
rs4119567	0.96[ASN][1000 genomes]
rs4126555	0.93[ASN][1000 genomes]
rs4126556	0.93[ASN][1000 genomes]
rs4126557	0.93[ASN][1000 genomes]
rs4126558	0.93[ASN][1000 genomes]
rs4140573	0.93[ASN][1000 genomes]
rs4490668	0.96[ASN][1000 genomes]
rs4495274	0.96[ASN][1000 genomes]
rs4554321	0.90[ASN][1000 genomes]
rs4607420	0.91[ASN][1000 genomes]
rs4712113	0.91[ASN][1000 genomes]
rs4715585	0.93[ASN][1000 genomes]
rs4715588	0.96[ASN][1000 genomes]
rs4715589	0.93[ASN][1000 genomes]
rs4715591	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715592	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715593	0.93[ASN][1000 genomes]
rs4715597	0.89[EUR][1000 genomes]
rs6459128	0.93[ASN][1000 genomes]
rs6459129	0.96[ASN][1000 genomes]
rs6459133	0.96[ASN][1000 genomes]
rs6459134	0.96[ASN][1000 genomes]
rs6459136	0.93[ASN][1000 genomes]
rs6904431	0.93[ASN][1000 genomes]
rs6904899	0.93[ASN][1000 genomes]
rs6908195	0.93[ASN][1000 genomes]
rs6911907	0.93[ASN][1000 genomes]
rs6914495	0.93[ASN][1000 genomes]
rs6914892	0.93[ASN][1000 genomes]
rs6917593	0.91[ASN][1000 genomes]
rs6922057	0.91[ASN][1000 genomes]
rs6933151	0.93[ASN][1000 genomes]
rs6934945	0.87[ASN][1000 genomes]
rs6935152	0.93[ASN][1000 genomes]
rs6935200	0.93[ASN][1000 genomes]
rs6939465	0.93[ASN][1000 genomes]
rs6939632	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7450147	0.93[ASN][1000 genomes]
rs7754787	0.93[ASN][1000 genomes]
rs7762422	0.92[ASN][1000 genomes]
rs7774374	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296830	0.91[ASN][1000 genomes]
rs9357891	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357892	0.89[ASN][1000 genomes]
rs9357894	0.82[ASN][1000 genomes]
rs9370485	0.91[ASN][1000 genomes]
rs9370486	0.93[ASN][1000 genomes]
rs9370493	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9382583	0.83[EUR][1000 genomes]
rs9382595	0.93[ASN][1000 genomes]
rs9396176	0.91[ASN][1000 genomes]
rs9396181	0.93[ASN][1000 genomes]
rs9464348	0.93[ASN][1000 genomes]
rs9475593	0.93[ASN][1000 genomes]
rs9475621	0.93[ASN][1000 genomes]
rs994667	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56053400-56058600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:56055400-56058600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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