Variant report

Variant	rs28410983
Chromosome Location	chr14:72469224-72469225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10047915	1.00[EUR][1000 genomes]
rs10129266	1.00[EUR][1000 genomes]
rs10134070	1.00[EUR][1000 genomes]
rs10134883	1.00[EUR][1000 genomes]
rs10146194	1.00[EUR][1000 genomes]
rs28417884	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28702941	1.00[EUR][1000 genomes]
rs28776512	1.00[EUR][1000 genomes]
rs2877775	1.00[EUR][1000 genomes]
rs28829720	1.00[EUR][1000 genomes]
rs57027270	1.00[EUR][1000 genomes]
rs7150767	1.00[EUR][1000 genomes]
rs7151873	1.00[EUR][1000 genomes]
rs7151878	1.00[EUR][1000 genomes]
rs72625695	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72467000-72471000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:72468000-72470200	Enhancers	Fetal Brain Male	brain
3	chr14:72468000-72470400	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:72468000-72470400	Weak transcription	Left Ventricle	heart
5	chr14:72469000-72470000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72469000-72470200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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