The 2.0 version of rSNPBase

Variant report

Variant rs28411988
Chromosome Location chr19:42944760-42944761
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:42928800-42944800 Weak transcription Esophagus oesophagus
2 chr19:42929600-42945200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr19:42937800-42945000 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr19:42938000-42944800 Weak transcription Brain Hippocampus Middle brain
5 chr19:42938000-42944800 Weak transcription Fetal Intestine Large intestine
6 chr19:42938000-42944800 Weak transcription Fetal Lung lung
7 chr19:42938000-42944800 Weak transcription Pancreas Pancrea
8 chr19:42938000-42944800 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr19:42938000-42945200 Weak transcription Fetal Stomach stomach
10 chr19:42938000-42946200 Enhancers Adipose Nuclei Adipose
11 chr19:42938000-42946800 Weak transcription Right Ventricle heart
12 chr19:42938000-42950200 Weak transcription Gastric stomach
13 chr19:42938000-42954200 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr19:42939800-42944800 Weak transcription Left Ventricle heart
15 chr19:42942200-42944800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr19:42942800-42944800 Enhancers Stomach Mucosa stomach
17 chr19:42943200-42945000 Weak transcription Small Intestine intestine
18 chr19:42943200-42947400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr19:42944400-42944800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr19:42944400-42944800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr19:42944400-42945000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr19:42944400-42945000 Enhancers Primary B cells from peripheral blood blood
23 chr19:42944400-42945600 Enhancers Primary T regulatory cells fromperipheralblood blood
24 chr19:42944400-42945800 Enhancers Duodenum Mucosa Duodenum
25 chr19:42944400-42946000 Enhancers Primary T helper naive cells from peripheral blood blood
26 chr19:42944400-42946000 Enhancers Primary T helper naive cells fromperipheralblood blood
27 chr19:42944400-42946000 Enhancers Primary Natural Killer cells fromperipheralblood blood
28 chr19:42944400-42946200 Enhancers Primary hematopoietic stem cells blood
29 chr19:42944400-42946800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
30 chr19:42944400-42947000 Enhancers Primary T cells fromperipheralblood blood
31 chr19:42944400-42947000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
32 chr19:42944400-42947000 Enhancers Primary T helper cells PMA-I stimulated --
33 chr19:42944400-42947000 Enhancers Primary T helper cells fromperipheralblood blood
34 chr19:42944600-42944800 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
35 chr19:42944600-42945000 Enhancers Brain Cingulate Gyrus brain
36 chr19:42944600-42945000 Enhancers Fetal Muscle Leg muscle
37 chr19:42944600-42945200 Enhancers Primary T cells from cord blood blood
38 chr19:42944600-42945200 Enhancers Brain Anterior Caudate brain
39 chr19:42944600-42945400 Enhancers Liver Liver
40 chr19:42944600-42945600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr19:42944600-42945600 Flanking Active TSS HepG2 liver
42 chr19:42944600-42945800 Enhancers Fetal Adrenal Gland Adrenal Gland
43 chr19:42944600-42945800 Enhancers Fetal Intestine Small intestine
44 chr19:42944600-42945800 Enhancers Rectal Mucosa Donor 31 rectum
45 chr19:42944600-42946000 Enhancers Breast Myoepithelial Primary Cells Breast
46 chr19:42944600-42946000 Enhancers Primary T killer naive cells fromperipheralblood blood
47 chr19:42944600-42946200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
48 chr19:42944600-42947200 Enhancers Primary hematopoietic stem cells short term culture blood
49 chr19:42944600-42947400 Enhancers Primary B cells from cord blood blood
50 chr19:42944600-42947600 Enhancers Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015