Variant report

Variant	rs28415396
Chromosome Location	chr1:71111969-71111970
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11209690	1.00[EUR][1000 genomes]
rs12058271	1.00[EUR][1000 genomes]
rs12070022	1.00[EUR][1000 genomes]
rs12074313	1.00[EUR][1000 genomes]
rs12092951	1.00[EUR][1000 genomes]
rs12096502	1.00[EUR][1000 genomes]
rs12098192	1.00[EUR][1000 genomes]
rs1577367	1.00[EUR][1000 genomes]
rs17131342	1.00[EUR][1000 genomes]
rs17131407	1.00[EUR][1000 genomes]
rs1932059	1.00[EUR][1000 genomes]
rs2992040	1.00[EUR][1000 genomes]
rs72926266	1.00[EUR][1000 genomes]
rs72928383	1.00[EUR][1000 genomes]
rs72928385	1.00[EUR][1000 genomes]
rs74085288	1.00[EUR][1000 genomes]
rs7516046	1.00[EUR][1000 genomes]
rs7544159	1.00[EUR][1000 genomes]
rs9662819	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871024	chr1:71088106-71169865	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871703	chr1:71093805-71127061	Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3390184	chr1:71111789-71115237	Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3435989	chr1:71111864-71114512	Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3453813	chr1:71111864-71114862	Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3453814	chr1:71111864-71114862	Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71111600-71115400	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links