Variant report

Variant	rs28415772
Chromosome Location	chr14:66199075-66199076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66198099..66200739-chr14:66200960..66203371,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10083327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10083356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129221	1.00[AMR][1000 genomes]
rs10129828	1.00[AMR][1000 genomes]
rs10131616	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135224	0.89[AFR][1000 genomes]
rs10138881	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139190	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140494	1.00[AMR][1000 genomes]
rs10141632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143944	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144478	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146510	1.00[AMR][1000 genomes]
rs10147262	1.00[AMR][1000 genomes]
rs10162357	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102765	1.00[AMR][1000 genomes]
rs17102767	1.00[AMR][1000 genomes]
rs17102769	1.00[AMR][1000 genomes]
rs28370375	1.00[AMR][1000 genomes]
rs28375638	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399233	1.00[AMR][1000 genomes]
rs28452937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28571055	1.00[AMR][1000 genomes]
rs28612256	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28716649	1.00[AMR][1000 genomes]
rs28789146	1.00[AMR][1000 genomes]
rs28789509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808288	1.00[AMR][1000 genomes]
rs28808905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28864090	1.00[AMR][1000 genomes]
rs28890806	1.00[AMR][1000 genomes]
rs57330939	1.00[AMR][1000 genomes]
rs73286155	0.80[AFR][1000 genomes]
rs73286159	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66179000-66206200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:66185400-66209000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:66186400-66208800	Weak transcription	Fetal Brain Female	brain
4	chr14:66187000-66209000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:66187400-66208600	Weak transcription	Placenta	Placenta
6	chr14:66187600-66200000	Weak transcription	Brain Substantia Nigra	brain
7	chr14:66188000-66210800	Weak transcription	Fetal Lung	lung
8	chr14:66188200-66201400	Weak transcription	Psoas Muscle	Psoas
9	chr14:66188400-66210600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr14:66188800-66208800	Weak transcription	Liver	Liver
11	chr14:66189000-66209000	Weak transcription	NHDF-Ad	bronchial
12	chr14:66189600-66210800	Weak transcription	NHLF	lung
13	chr14:66189800-66209000	Weak transcription	HSMMtube	muscle
14	chr14:66190000-66208800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:66190000-66210800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:66190200-66210800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:66190400-66217000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:66191600-66212000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:66191800-66199800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:66191800-66200000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:66191800-66200800	Weak transcription	Brain Anterior Caudate	brain
22	chr14:66191800-66204400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:66191800-66208600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:66191800-66208800	Weak transcription	Gastric	stomach
25	chr14:66191800-66208800	Weak transcription	Pancreas	Pancrea
26	chr14:66191800-66210800	Weak transcription	HSMM	muscle
27	chr14:66191800-66217800	Weak transcription	Small Intestine	intestine
28	chr14:66192000-66206800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:66192200-66200000	Weak transcription	NH-A	brain
30	chr14:66192200-66208800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr14:66192400-66210200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:66192600-66210400	Weak transcription	Right Ventricle	heart
33	chr14:66192800-66210600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:66192800-66211800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:66192800-66212200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr14:66193000-66218800	Weak transcription	Colonic Mucosa	Colon
37	chr14:66193200-66206600	Strong transcription	Dnd41	blood
38	chr14:66193200-66208800	Weak transcription	Adipose Nuclei	Adipose
39	chr14:66193800-66208800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:66193800-66208800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:66194200-66207400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr14:66194200-66208800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:66194200-66210600	Weak transcription	Spleen	Spleen
44	chr14:66194400-66200000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:66194400-66200200	Weak transcription	Fetal Intestine Small	intestine
46	chr14:66194400-66201000	Weak transcription	Brain Germinal Matrix	brain
47	chr14:66194400-66201400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:66194400-66201400	Weak transcription	Left Ventricle	heart
49	chr14:66194400-66204400	Weak transcription	Fetal Intestine Large	intestine
50	chr14:66194400-66205400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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