Variant report

Variant	rs2841593
Chromosome Location	chr1:215203995-215203996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1156732	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12097900	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1377174	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1377176	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452611	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452613	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452614	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452615	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452616	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452617	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452618	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452619	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452621	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1452622	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1562993	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1562994	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1597846	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1901622	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2167687	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2601626	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2601627	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2601628	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2601629	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2601631	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2601632	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2802646	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2802652	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2802653	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2802655	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2802656	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2841576	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2841578	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2841582	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2841584	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2841585	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2841586	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2841589	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2841590	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2841603	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215177200-215211200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:215198000-215206200	Weak transcription	Osteobl	bone
3	chr1:215199400-215206000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215203800-215204000	Weak transcription	NHDF-Ad	bronchial

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