Variant report
| Variant | rs28416900 |
|---|---|
| Chromosome Location | chr4:81912765-81912766 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10004039 | 0.84[EUR][1000 genomes] |
| rs10014087 | 0.84[ASN][1000 genomes] |
| rs10018517 | 0.84[EUR][1000 genomes] |
| rs10032338 | 0.85[EUR][1000 genomes] |
| rs11099457 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1495644 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17005016 | 0.84[EUR][1000 genomes] |
| rs17005022 | 0.91[ASN][1000 genomes] |
| rs2088187 | 0.87[EUR][1000 genomes] |
| rs28420618 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2868128 | 0.91[ASN][1000 genomes] |
| rs2903747 | 0.85[EUR][1000 genomes] |
| rs4693151 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4693767 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4693781 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56787802 | 0.85[EUR][1000 genomes] |
| rs57339266 | 0.84[EUR][1000 genomes] |
| rs6823242 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72866930 | 0.81[EUR][1000 genomes] |
| rs7676223 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9307776 | 0.84[EUR][1000 genomes] |
| rs963322 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs963856 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs963857 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999729 | chr4:81802554-82627820 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv537156 | chr4:81802554-82627820 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv3412549 | chr4:81834479-81951850 | Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1006466 | chr4:81888983-82009675 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:81910800-81914200 | Enhancers | Primary B cells from cord blood | blood |
