Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:81910904..81911808-chr4:81961317..81961859,2	MCF-7	breast:
2	chr4:81283380..81284379-chr4:81910732..81911711,4	MCF-7	breast:
3	chr4:79873114..79873664-chr4:81910812..81911504,2	K562	blood:
4	chr4:81286893..81287953-chr4:81910802..81911642,3	MCF-7	breast:
5	chr4:81282194..81283135-chr4:81910846..81911347,2	K562	blood:
6	chr4:81539992..81540886-chr4:81910834..81911713,5	MCF-7	breast:
7	chr4:81286788..81287763-chr4:81910772..81911418,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10004039	0.81[EUR][1000 genomes]
rs10014087	0.84[ASN][1000 genomes]
rs10018517	0.81[EUR][1000 genomes]
rs10032338	0.82[EUR][1000 genomes]
rs11099457	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495644	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17005016	0.81[EUR][1000 genomes]
rs17005022	0.91[ASN][1000 genomes]
rs2088187	0.83[EUR][1000 genomes]
rs28416900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2868128	0.91[ASN][1000 genomes]
rs2903747	0.82[EUR][1000 genomes]
rs4693151	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4693767	0.89[ASN][1000 genomes]
rs4693781	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56787802	0.82[EUR][1000 genomes]
rs57339266	0.81[EUR][1000 genomes]
rs6823242	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676223	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307776	0.81[EUR][1000 genomes]
rs963322	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs963856	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs963857	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3412549	chr4:81834479-81951850	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81910400-81911200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:81910800-81914200	Enhancers	Primary B cells from cord blood	blood
3	chr4:81911000-81911200	Weak transcription	Fetal Kidney	kidney
4	chr4:81911000-81911600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:81911000-81911600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:81911000-81911600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr4:81911000-81911600	Enhancers	Colon Smooth Muscle	Colon
8	chr4:81911000-81912200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:81911000-81912400	Enhancers	Primary B cells from peripheral blood	blood

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