Variant report
| Variant | rs28428996 |
|---|---|
| Chromosome Location | chr2:37393941-37393942 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:37392690..37395539-chr2:37397439..37400385,2 | K562 | blood: | |
| 2 | chr2:37384110..37386045-chr2:37392085..37394619,2 | MCF-7 | breast: | |
| 3 | chr2:37387188..37389991-chr2:37393391..37396132,3 | MCF-7 | breast: | |
| 4 | chr2:37382322..37385253-chr2:37392410..37395153,2 | MCF-7 | breast: | |
| 5 | chr2:37375543..37378467-chr2:37391547..37394733,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000055332 | Chromatin interaction |
| ENSG00000224891 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10173858 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10181241 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10181658 | 0.81[EUR][1000 genomes] |
| rs10181764 | 0.81[EUR][1000 genomes] |
| rs10182091 | 0.82[EUR][1000 genomes] |
| rs10204828 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10205526 | 0.82[EUR][1000 genomes] |
| rs10205833 | 0.82[EUR][1000 genomes] |
| rs10209193 | 0.82[EUR][1000 genomes] |
| rs10865122 | 0.81[EUR][1000 genomes] |
| rs11885155 | 0.81[EUR][1000 genomes] |
| rs11885277 | 0.81[EUR][1000 genomes] |
| rs2111630 | 0.82[EUR][1000 genomes] |
| rs2373190 | 0.82[EUR][1000 genomes] |
| rs4374352 | 0.82[EUR][1000 genomes] |
| rs4459710 | 0.82[EUR][1000 genomes] |
| rs4670667 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4670668 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4670675 | 0.81[EUR][1000 genomes] |
| rs58868860 | 0.81[EUR][1000 genomes] |
| rs62134998 | 0.81[EUR][1000 genomes] |
| rs62135000 | 0.81[EUR][1000 genomes] |
| rs62135001 | 0.81[EUR][1000 genomes] |
| rs6718775 | 0.82[EUR][1000 genomes] |
| rs6734946 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6742281 | 0.81[EUR][1000 genomes] |
| rs6747446 | 0.81[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
