Variant report

Variant	rs28429124
Chromosome Location	chr4:147912247-147912248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10011414	1.00[AFR][1000 genomes]
rs10029336	1.00[AFR][1000 genomes]
rs10029415	1.00[AFR][1000 genomes]
rs10032981	1.00[AFR][1000 genomes]
rs13353682	1.00[AFR][1000 genomes]
rs13434880	1.00[AFR][1000 genomes]
rs28485213	1.00[AFR][1000 genomes]
rs28489480	1.00[AFR][1000 genomes]
rs28580106	1.00[AFR][1000 genomes]
rs28657904	1.00[AFR][1000 genomes]
rs28688131	1.00[AFR][1000 genomes]
rs28690223	1.00[AFR][1000 genomes]
rs28698911	1.00[AFR][1000 genomes]
rs73853282	1.00[AFR][1000 genomes]
rs73853292	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147912000-147912400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:147912000-147912600	ZNF genes & repeats	Pancreas	Pancrea
3	chr4:147912000-147913000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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