Variant report

Variant	rs28433890
Chromosome Location	chr19:42977766-42977767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10401178	1.00[AMR][1000 genomes]
rs10402853	1.00[AMR][1000 genomes]
rs10404589	1.00[AMR][1000 genomes]
rs10405037	0.90[AMR][1000 genomes]
rs10405179	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10406227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10408822	1.00[AMR][1000 genomes]
rs10412074	1.00[AMR][1000 genomes]
rs10412173	0.90[AMR][1000 genomes]
rs10412594	1.00[AMR][1000 genomes]
rs10414396	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10415284	0.90[AMR][1000 genomes]
rs10418090	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10419543	0.90[AMR][1000 genomes]
rs10420773	0.95[AMR][1000 genomes]
rs10423227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10423370	0.90[AMR][1000 genomes]
rs10425199	0.90[AMR][1000 genomes]
rs10425666	1.00[AMR][1000 genomes]
rs10426304	0.90[AMR][1000 genomes]
rs11880554	0.95[AMR][1000 genomes]
rs11880876	0.90[AMR][1000 genomes]
rs11882291	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13346522	0.95[AMR][1000 genomes]
rs16975787	1.00[AMR][1000 genomes]
rs16975815	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28403155	1.00[AMR][1000 genomes]
rs28602626	0.95[AMR][1000 genomes]
rs28635141	0.95[AMR][1000 genomes]
rs28660279	0.90[AMR][1000 genomes]
rs41348545	1.00[AMR][1000 genomes]
rs41381546	1.00[AMR][1000 genomes]
rs41421250	0.95[AMR][1000 genomes]
rs57018456	1.00[AMR][1000 genomes]
rs58050143	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58162305	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs58702905	0.95[AMR][1000 genomes]
rs60747186	0.85[AMR][1000 genomes]
rs61388144	0.95[AMR][1000 genomes]
rs6509015	1.00[AMR][1000 genomes]
rs7247278	1.00[AMR][1000 genomes]
rs7248907	1.00[AMR][1000 genomes]
rs7249304	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7250501	1.00[AMR][1000 genomes]
rs7253634	1.00[AMR][1000 genomes]
rs7256850	0.95[AMR][1000 genomes]
rs7259335	1.00[AMR][1000 genomes]
rs73558492	0.90[AMR][1000 genomes]
rs73558498	0.90[AMR][1000 genomes]
rs73560408	0.95[AMR][1000 genomes]
rs8101378	1.00[AMR][1000 genomes]
rs8105525	0.95[AMR][1000 genomes]
rs8106836	0.95[AMR][1000 genomes]
rs8107720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8108992	0.95[AMR][1000 genomes]
rs8110904	0.89[AMR][1000 genomes]
rs8110922	1.00[AMR][1000 genomes]
rs8111171	0.95[AMR][1000 genomes]
rs8111468	0.84[AMR][1000 genomes]
rs8112593	0.90[AMR][1000 genomes]
rs8112915	0.90[AMR][1000 genomes]
rs8113154	0.90[AMR][1000 genomes]
rs8113448	0.90[AMR][1000 genomes]
rs9749434	0.95[AMR][1000 genomes]
rs9916999	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42971000-42978000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:42971600-42978000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:42971600-42979000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:42972600-42979200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:42973800-42981400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr19:42974200-42977800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr19:42974200-42980200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr19:42974400-42977800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:42974400-42984800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr19:42974600-42979000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr19:42974600-42980200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:42975000-42979000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr19:42975000-42981200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr19:42975000-42981400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr19:42975200-42980400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr19:42975400-42979000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr19:42975600-42981600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr19:42976400-42981000	Weak transcription	Adipose Nuclei	Adipose
19	chr19:42977400-42978200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr19:42977400-42978400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:42977400-42979000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr19:42977400-42979000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr19:42977400-42980200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr19:42977400-42984800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr19:42977600-42978000	Weak transcription	H1 Cell Line	embryonic stem cell

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