The 2.0 version of rSNPBase

Variant report

Variant rs28435460
Chromosome Location chr12:123867602-123867603
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:123850600-123867800 Weak transcription Right Atrium heart
2 chr12:123864400-123867800 Weak transcription HMEC breast
3 chr12:123864400-123867800 Weak transcription NHEK skin
4 chr12:123864600-123868000 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr12:123867000-123868000 Enhancers GM12878-XiMat blood
6 chr12:123867000-123869600 Active TSS HSMM muscle
7 chr12:123867200-123867800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
8 chr12:123867200-123867800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr12:123867200-123867800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
10 chr12:123867200-123867800 Enhancers Adipose Nuclei Adipose
11 chr12:123867200-123867800 Enhancers Liver Liver
12 chr12:123867200-123867800 Enhancers Fetal Adrenal Gland Adrenal Gland
13 chr12:123867200-123867800 Enhancers Rectal Smooth Muscle rectum
14 chr12:123867200-123867800 Enhancers Dnd41 blood
15 chr12:123867200-123868600 Enhancers Spleen Spleen
16 chr12:123867200-123868800 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr12:123867200-123868800 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
18 chr12:123867200-123869000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
19 chr12:123867200-123869000 Active TSS Colonic Mucosa Colon
20 chr12:123867200-123869400 Active TSS iPS-18 Cell Line embryonic stem cell
21 chr12:123867200-123869400 Active TSS A549 lung
22 chr12:123867200-123869600 Active TSS H9 Cell Line embryonic stem cell
23 chr12:123867200-123869600 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
24 chr12:123867200-123869800 Active TSS iPS-15b Cell Line embryonic stem cell
25 chr12:123867200-123870000 Active TSS HUES6 Cell Line embryonic stem cell
26 chr12:123867400-123867800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
27 chr12:123867400-123867800 Enhancers Colon Smooth Muscle Colon
28 chr12:123867400-123867800 Weak transcription Psoas Muscle Psoas
29 chr12:123867400-123868000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr12:123867400-123869000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr12:123867400-123869600 Active TSS HUES64 Cell Line embryonic stem cell
32 chr12:123867400-123869800 Active TSS H1 Cell Line embryonic stem cell
33 chr12:123867400-123869800 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr12:123867400-123870000 Active TSS ES-I3 Cell Line embryonic stem cell
35 chr12:123867400-123870000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr12:123867600-123867800 Enhancers Primary hematopoietic stem cells short term culture blood
37 chr12:123867600-123867800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr12:123867600-123867800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr12:123867600-123867800 Enhancers Duodenum Mucosa Duodenum
40 chr12:123867600-123867800 Enhancers Fetal Muscle Leg muscle
41 chr12:123867600-123868000 Flanking Active TSS Placenta Placenta
42 chr12:123867600-123868400 Flanking Active TSS Fetal Muscle Trunk muscle
43 chr12:123867600-123868800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr12:123867600-123869200 Active TSS Fetal Intestine Large intestine
45 chr12:123867600-123869200 Active TSS Fetal Intestine Small intestine
46 chr12:123867600-123869800 Active TSS Hela-S3 cervix
47 chr12:123867600-123869800 Active TSS HepG2 liver
48 chr12:123867600-123870200 Active TSS K562 blood

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Last update: Aug 31, 2015