Variant report

Variant	rs28435523
Chromosome Location	chr15:76425074-76425075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76415987..76417997-chr15:76424197..76426692,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1018098	0.85[ASN][1000 genomes]
rs11630305	0.85[ASN][1000 genomes]
rs12324142	0.92[EUR][1000 genomes]
rs1391470	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16967934	1.00[EUR][1000 genomes]
rs1874767	0.81[AFR][1000 genomes]
rs2469563	0.92[EUR][1000 genomes]
rs28623186	1.00[ASN][1000 genomes]
rs28713704	0.92[EUR][1000 genomes]
rs2935971	0.85[ASN][1000 genomes]
rs2935979	0.91[AFR][1000 genomes]
rs2935980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2955721	0.92[ASN][1000 genomes]
rs2955722	0.92[ASN][1000 genomes]
rs2955723	0.92[ASN][1000 genomes]
rs2955725	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955729	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955730	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955738	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955739	0.85[ASN][1000 genomes]
rs2955742	1.00[ASN][1000 genomes]
rs2957039	0.92[ASN][1000 genomes]
rs2957040	0.85[ASN][1000 genomes]
rs2957042	0.92[ASN][1000 genomes]
rs2959858	0.85[ASN][1000 genomes]
rs2959860	0.85[ASN][1000 genomes]
rs2959861	1.00[ASN][1000 genomes]
rs2959863	0.92[ASN][1000 genomes]
rs2959867	0.91[AFR][1000 genomes]
rs57906605	1.00[EUR][1000 genomes]
rs58215773	1.00[EUR][1000 genomes]
rs58863068	1.00[EUR][1000 genomes]
rs7163654	1.00[EUR][1000 genomes]
rs74024085	0.92[EUR][1000 genomes]
rs74024095	1.00[EUR][1000 genomes]
rs74024096	1.00[EUR][1000 genomes]
rs74024098	1.00[EUR][1000 genomes]
rs74024101	1.00[EUR][1000 genomes]
rs74024102	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76416600-76431600	Weak transcription	Pancreas	Pancrea

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