Variant report

Variant	rs28435689
Chromosome Location	chr2:210523292-210523293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10165558	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10169017	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10172200	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10183590	0.93[ASN][1000 genomes]
rs10183604	0.93[ASN][1000 genomes]
rs10189911	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10193321	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10196314	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10196600	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10206817	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10490021	0.93[ASN][1000 genomes]
rs10804176	0.93[ASN][1000 genomes]
rs10932305	0.93[ASN][1000 genomes]
rs11677975	0.93[ASN][1000 genomes]
rs11682692	0.93[ASN][1000 genomes]
rs11687043	0.91[ASN][1000 genomes]
rs11691800	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11691894	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11692075	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11692345	0.91[ASN][1000 genomes]
rs12613705	0.93[ASN][1000 genomes]
rs12614031	0.93[ASN][1000 genomes]
rs12616589	0.80[ASN][1000 genomes]
rs12618080	0.95[ASN][1000 genomes]
rs12619253	0.93[ASN][1000 genomes]
rs12619409	0.93[ASN][1000 genomes]
rs13385585	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409134	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13422521	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13423127	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1509468	0.87[ASN][1000 genomes]
rs1509469	0.81[ASN][1000 genomes]
rs1509470	0.80[ASN][1000 genomes]
rs16843329	0.80[ASN][1000 genomes]
rs16843351	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16843354	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16843360	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16843382	0.95[ASN][1000 genomes]
rs16843421	0.98[ASN][1000 genomes]
rs16843453	0.93[ASN][1000 genomes]
rs16843515	0.93[ASN][1000 genomes]
rs16843544	0.93[ASN][1000 genomes]
rs16843614	0.93[ASN][1000 genomes]
rs16843618	0.93[ASN][1000 genomes]
rs16843626	0.93[ASN][1000 genomes]
rs16843651	0.93[ASN][1000 genomes]
rs2191910	0.91[ASN][1000 genomes]
rs2215624	0.93[ASN][1000 genomes]
rs2215625	0.84[ASN][1000 genomes]
rs2239552	0.93[ASN][1000 genomes]
rs2239553	0.93[ASN][1000 genomes]
rs2239672	0.93[ASN][1000 genomes]
rs2268042	0.93[ASN][1000 genomes]
rs2268044	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2268045	0.93[ASN][1000 genomes]
rs2271252	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2284359	0.93[ASN][1000 genomes]
rs2284360	0.93[ASN][1000 genomes]
rs2286849	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286850	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2300154	0.93[ASN][1000 genomes]
rs2663647	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2663649	0.80[ASN][1000 genomes]
rs2663650	0.82[ASN][1000 genomes]
rs2663651	0.80[ASN][1000 genomes]
rs2663653	0.80[ASN][1000 genomes]
rs2663658	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2710480	0.86[ASN][1000 genomes]
rs2710482	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28666486	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28758270	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3738935	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3754597	0.93[ASN][1000 genomes]
rs3768810	0.93[ASN][1000 genomes]
rs3768811	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768813	0.93[ASN][1000 genomes]
rs3768814	0.93[ASN][1000 genomes]
rs3768815	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3768816	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3768820	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3768821	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768823	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3768826	0.95[ASN][1000 genomes]
rs3768827	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768828	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768830	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768832	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768833	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768834	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768835	0.95[ASN][1000 genomes]
rs3820746	0.93[ASN][1000 genomes]
rs3820748	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3886931	0.93[ASN][1000 genomes]
rs4673486	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56659802	0.95[ASN][1000 genomes]
rs56825045	0.93[ASN][1000 genomes]
rs57542539	0.93[ASN][1000 genomes]
rs57853945	0.93[ASN][1000 genomes]
rs58295121	0.92[ASN][1000 genomes]
rs58525719	0.93[ASN][1000 genomes]
rs58779755	0.89[ASN][1000 genomes]
rs59155421	0.95[ASN][1000 genomes]
rs59555743	0.93[ASN][1000 genomes]
rs60138527	0.80[ASN][1000 genomes]
rs61333809	0.93[ASN][1000 genomes]
rs61420319	0.93[ASN][1000 genomes]
rs6709925	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6717554	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6720659	0.93[ASN][1000 genomes]
rs6724834	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6746029	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs741006	0.93[ASN][1000 genomes]
rs741007	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7567257	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7594601	0.93[ASN][1000 genomes]
rs7596811	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs962475	0.80[ASN][1000 genomes]
rs994862	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210507800-210525800	Weak transcription	NH-A	brain
2	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
3	chr2:210508400-210527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:210513600-210525600	Weak transcription	Fetal Brain Male	brain
5	chr2:210514000-210528000	Weak transcription	Ovary	ovary
6	chr2:210516200-210525800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:210516400-210530200	Weak transcription	Pancreas	Pancrea
8	chr2:210516600-210525800	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:210516600-210526000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:210516600-210526000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:210518000-210526000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:210518200-210526000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210518200-210526000	Weak transcription	Brain Angular Gyrus	brain
14	chr2:210518200-210543200	Weak transcription	Aorta	Aorta
15	chr2:210518400-210524000	Weak transcription	Brain Germinal Matrix	brain
16	chr2:210519200-210525800	Weak transcription	Brain Anterior Caudate	brain
17	chr2:210519600-210523600	Weak transcription	Fetal Brain Female	brain
18	chr2:210520400-210523800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:210522200-210523600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:210522400-210525600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:210522400-210525800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:210522800-210523600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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