Variant report

Variant	rs28437725
Chromosome Location	chr15:78496344-78496345
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78487022..78489077-chr15:78494616..78496936,2	MCF-7	breast:
2	chr15:78460946..78462466-chr15:78493777..78496351,2	K562	blood:
3	chr15:78496325..78498387-chr15:78501053..78503232,2	MCF-7	breast:
4	chr15:78495486..78497767-chr15:78498065..78500921,4	K562	blood:

Variant related genes	Relation type
ENSG00000103740	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28408435	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28604437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28674481	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28676476	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28706083	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28721966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28781283	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3816254	0.86[ASN][1000 genomes]
rs8041851	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv904430	chr15:78466127-78507316	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78488400-78497000	Weak transcription	Spleen	Spleen
2	chr15:78492800-78500200	Enhancers	Fetal Muscle Leg	muscle
3	chr15:78493800-78504200	Enhancers	Brain Substantia Nigra	brain
4	chr15:78494200-78508800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr15:78494200-78509800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr15:78494800-78508800	Enhancers	Brain Hippocampus Middle	brain
7	chr15:78494800-78509800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:78495000-78500200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:78495000-78500400	Enhancers	Brain Angular Gyrus	brain
10	chr15:78495000-78504200	Enhancers	Brain Cingulate Gyrus	brain
11	chr15:78495200-78497400	Enhancers	Right Ventricle	heart
12	chr15:78495200-78498400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:78495200-78499600	Enhancers	Fetal Heart	heart
14	chr15:78495400-78496400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:78495400-78496400	Flanking Active TSS	Brain Anterior Caudate	brain
16	chr15:78495400-78497800	Enhancers	Fetal Intestine Small	intestine
17	chr15:78495400-78498400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:78495400-78499600	Enhancers	Psoas Muscle	Psoas
19	chr15:78495400-78499800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:78495400-78502600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr15:78495400-78510000	Enhancers	Pancreas	Pancrea
22	chr15:78495400-78511000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr15:78495600-78496600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr15:78495600-78497000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr15:78495600-78497200	Bivalent Enhancer	Placenta	Placenta
26	chr15:78495600-78499600	Enhancers	Left Ventricle	heart
27	chr15:78495800-78496600	Enhancers	K562	blood
28	chr15:78495800-78497200	Enhancers	Lung	lung
29	chr15:78495800-78497600	Enhancers	Right Atrium	heart
30	chr15:78495800-78500200	Enhancers	HSMMtube	muscle
31	chr15:78495800-78501600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:78496000-78496400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:78496000-78496400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:78496000-78497000	Bivalent Enhancer	Fetal Stomach	stomach
35	chr15:78496000-78507200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:78496200-78496400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:78496200-78496600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:78496200-78499800	Enhancers	Ovary	ovary
39	chr15:78496200-78500200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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