Variant report

Variant	rs28438427
Chromosome Location	chr5:178134114-178134115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10040079	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10044496	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10055721	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10479505	0.81[EUR][1000 genomes]
rs11747569	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11949789	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13173933	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4246822	0.96[ASN][1000 genomes]
rs4260688	0.97[ASN][1000 genomes]
rs4288133	0.99[ASN][1000 genomes]
rs4296820	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4398651	0.80[AMR][1000 genomes]
rs6422326	0.85[ASN][1000 genomes]
rs6600944	0.85[ASN][1000 genomes]
rs6600945	0.98[ASN][1000 genomes]
rs6859031	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6860052	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6871083	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6872989	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873580	0.82[EUR][1000 genomes]
rs7446765	0.96[ASN][1000 genomes]
rs7714872	0.86[ASN][1000 genomes]
rs7715687	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7716636	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7733461	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7737159	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9329050	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv883217	chr5:178099758-178193081	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178130000-178150600	ZNF genes & repeats	Adipose Nuclei	Adipose

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