Variant report

Variant	rs28438876
Chromosome Location	chr4:142043415-142043416
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10001083	0.88[AFR][1000 genomes]
rs10029462	1.00[AFR][1000 genomes]
rs10029478	0.87[AFR][1000 genomes]
rs13435113	0.81[AFR][1000 genomes]
rs13435125	0.87[AFR][1000 genomes]
rs28372551	0.88[AFR][1000 genomes]
rs28417061	0.87[AFR][1000 genomes]
rs28433132	0.81[AFR][1000 genomes]
rs28457672	0.87[AFR][1000 genomes]
rs28465245	1.00[AFR][1000 genomes]
rs28612386	0.81[AFR][1000 genomes]
rs28628800	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142038600-142052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:142038800-142044400	Enhancers	Fetal Heart	heart
3	chr4:142039000-142049200	Weak transcription	Fetal Brain Female	brain
4	chr4:142039400-142051800	Weak transcription	Aorta	Aorta
5	chr4:142039800-142045000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:142039800-142045200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:142039800-142045200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:142040800-142043600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:142041000-142047600	Weak transcription	Spleen	Spleen
10	chr4:142041000-142048600	Weak transcription	Adipose Nuclei	Adipose
11	chr4:142041000-142052200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:142041800-142043600	Enhancers	Right Atrium	heart
13	chr4:142041800-142043800	Enhancers	Left Ventricle	heart
14	chr4:142042000-142043600	Enhancers	Right Ventricle	heart
15	chr4:142042200-142047400	Weak transcription	Psoas Muscle	Psoas
16	chr4:142042200-142048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:142042600-142045200	Weak transcription	Ovary	ovary
18	chr4:142042600-142048600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:142042800-142043600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:142042800-142046400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:142042800-142047400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr4:142043000-142043800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:142043200-142043600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr4:142043200-142043800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr4:142043200-142043800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr4:142043200-142043800	Enhancers	Fetal Lung	lung
27	chr4:142043200-142044000	Enhancers	Colon Smooth Muscle	Colon
28	chr4:142043400-142043600	Genic enhancers	Fetal Stomach	stomach
29	chr4:142043400-142043600	Enhancers	GM12878-XiMat	blood
30	chr4:142043400-142043800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr4:142043400-142043800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr4:142043400-142044200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr4:142043400-142047200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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