Variant report

Variant	rs28439127
Chromosome Location	chr8:10893307-10893308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10104571	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17149387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17152795	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17152797	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28439738	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28455558	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28556308	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28570328	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28754721	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57881531	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73541281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73543307	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10880000-10896800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:10883400-10899600	Weak transcription	Brain Anterior Caudate	brain
3	chr8:10887800-10894800	Weak transcription	Fetal Stomach	stomach
4	chr8:10889800-10894000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:10889800-10910800	Weak transcription	HSMMtube	muscle
6	chr8:10890400-10894000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:10890400-10895600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:10890400-10896800	Weak transcription	Spleen	Spleen
9	chr8:10890800-10894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:10891000-10893800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:10891000-10894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:10891200-10894400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:10891800-10894000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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