Variant report

Variant	rs28444108
Chromosome Location	chr7:147356967-147356968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10232275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10250323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11971876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28409404	0.83[AMR][1000 genomes]
rs55671052	1.00[EUR][1000 genomes]
rs55713890	1.00[EUR][1000 genomes]
rs55859712	1.00[EUR][1000 genomes]
rs56211187	1.00[EUR][1000 genomes]
rs73741205	1.00[EUR][1000 genomes]
rs73741207	1.00[EUR][1000 genomes]
rs73741209	1.00[EUR][1000 genomes]
rs73741212	1.00[EUR][1000 genomes]
rs73741213	1.00[EUR][1000 genomes]
rs73741214	1.00[EUR][1000 genomes]
rs851732	1.00[EUR][1000 genomes]
rs851733	1.00[EUR][1000 genomes]
rs851734	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv527018	chr7:147337742-147360817	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147355400-147357200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:147355400-147357400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:147355600-147357200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:147355600-147357400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:147355600-147357800	Enhancers	Fetal Lung	lung
6	chr7:147356200-147357000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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