Variant report

Variant	rs28445273
Chromosome Location	chr4:141924100-141924101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10001746	0.84[EUR][1000 genomes]
rs10213645	0.84[EUR][1000 genomes]
rs12019258	1.00[ASN][1000 genomes]
rs13129199	0.94[ASN][1000 genomes]
rs17343501	0.96[ASN][1000 genomes]
rs17425634	0.90[EUR][1000 genomes]
rs1895762	1.00[ASN][1000 genomes]
rs28627758	0.84[EUR][1000 genomes]
rs3851424	0.94[ASN][1000 genomes]
rs6823670	0.90[ASN][1000 genomes]
rs7690780	0.96[ASN][1000 genomes]
rs7692524	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141920000-141924400	Weak transcription	Left Ventricle	heart
2	chr4:141920000-141924400	Weak transcription	Right Atrium	heart
3	chr4:141920000-141924600	Weak transcription	Psoas Muscle	Psoas
4	chr4:141920200-141933200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:141920400-141937800	Weak transcription	Right Ventricle	heart
6	chr4:141923200-141924200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:141923200-141924600	Enhancers	Osteobl	bone
8	chr4:141923200-141925400	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:141923400-141924200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:141923400-141924200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr4:141923400-141924200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:141923400-141924200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr4:141923400-141924600	Enhancers	Adipose Nuclei	Adipose
14	chr4:141923400-141924800	Enhancers	Fetal Lung	lung
15	chr4:141923400-141924800	Enhancers	Ovary	ovary
16	chr4:141923400-141925200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:141923400-141925400	Enhancers	Colon Smooth Muscle	Colon
18	chr4:141923600-141924200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:141923600-141924200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr4:141923600-141924400	Flanking Active TSS	Fetal Heart	heart
21	chr4:141923600-141924600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr4:141923600-141924600	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr4:141923600-141924800	Enhancers	Fetal Stomach	stomach
24	chr4:141923800-141924400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr4:141923800-141924600	Enhancers	Fetal Muscle Leg	muscle
26	chr4:141923800-141925200	Enhancers	Aorta	Aorta
27	chr4:141924000-141925000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:141924000-141925200	Enhancers	Skeletal Muscle Female	skeletal muscle

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