Variant report

Variant	rs28446587
Chromosome Location	chr20:24474446-24474447
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24458098..24460302-chr20:24472208..24475161,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6049727	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24460800-24483800	Weak transcription	Aorta	Aorta
2	chr20:24471000-24475000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr20:24471200-24475600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:24471200-24493600	Weak transcription	Fetal Brain Female	brain
5	chr20:24471800-24475200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr20:24472000-24474600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr20:24472000-24475000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:24472200-24474800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr20:24472800-24478400	Weak transcription	Fetal Lung	lung
10	chr20:24473000-24475000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr20:24473000-24478600	Weak transcription	Brain Substantia Nigra	brain
12	chr20:24473000-24482600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr20:24473200-24474600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr20:24473200-24478200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr20:24473200-24480200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr20:24473200-24482000	Weak transcription	Brain Anterior Caudate	brain
17	chr20:24473200-24482400	Weak transcription	Right Atrium	heart
18	chr20:24473400-24474600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr20:24473400-24480000	Weak transcription	Brain Hippocampus Middle	brain
20	chr20:24473600-24478000	Weak transcription	Left Ventricle	heart
21	chr20:24473600-24482400	Weak transcription	Right Ventricle	heart
22	chr20:24473600-24483000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr20:24473800-24474800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr20:24474200-24474800	Weak transcription	Fetal Heart	heart
25	chr20:24474200-24475000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr20:24474200-24476000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr20:24474200-24476000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr20:24474200-24480200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr20:24474200-24480800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr20:24474200-24481200	Weak transcription	Fetal Brain Male	brain
31	chr20:24474400-24478400	Weak transcription	Brain Angular Gyrus	brain

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