Variant report

Variant	rs28448351
Chromosome Location	chr14:65778808-65778809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10130394	1.00[EUR][1000 genomes]
rs10146153	1.00[EUR][1000 genomes]
rs11849905	1.00[EUR][1000 genomes]
rs1256502	1.00[EUR][1000 genomes]
rs17102412	1.00[EUR][1000 genomes]
rs17102655	1.00[EUR][1000 genomes]
rs7149107	1.00[EUR][1000 genomes]
rs7160535	1.00[EUR][1000 genomes]
rs73272693	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65760000-65781000	Weak transcription	Primary B cells from cord blood	blood
2	chr14:65769200-65782400	Weak transcription	Gastric	stomach
3	chr14:65769400-65783600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65771200-65782400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:65772400-65787800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:65772800-65781000	Weak transcription	Primary T cells from cord blood	blood
7	chr14:65778400-65779000	Enhancers	Fetal Intestine Small	intestine
8	chr14:65778400-65779000	Enhancers	Ovary	ovary
9	chr14:65778400-65779000	ZNF genes & repeats	GM12878-XiMat	blood
10	chr14:65778400-65779400	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:65778400-65779400	Enhancers	Fetal Intestine Large	intestine
12	chr14:65778600-65780000	Enhancers	Duodenum Mucosa	Duodenum
13	chr14:65778800-65779200	Weak transcription	Stomach Mucosa	stomach
14	chr14:65778800-65779800	Enhancers	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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