Variant report

Variant	rs28448399
Chromosome Location	chr6:55945713-55945714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9296826	1.00[AFR][1000 genomes]
rs9464338	1.00[AFR][1000 genomes]
rs9464340	1.00[AFR][1000 genomes]
rs9464344	1.00[AFR][1000 genomes]
rs9475489	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55925600-55946200	Weak transcription	Fetal Kidney	kidney
3	chr6:55929000-55956200	Weak transcription	Aorta	Aorta
4	chr6:55933200-55961000	Weak transcription	Placenta	Placenta
5	chr6:55941200-55947800	Weak transcription	Left Ventricle	heart
6	chr6:55941200-55951600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:55941200-55952000	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:55941600-55951400	Weak transcription	Fetal Lung	lung
9	chr6:55943800-55946000	Enhancers	Osteobl	bone
10	chr6:55944000-55946200	Enhancers	HSMMtube	muscle
11	chr6:55944200-55946400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:55944200-55946400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:55944600-55945800	Enhancers	Fetal Heart	heart
14	chr6:55944800-55946000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:55945000-55946200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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