Variant report

Variant	rs28448523
Chromosome Location	chr8:63432870-63432871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10092099	1.00[ASN][1000 genomes]
rs10092296	1.00[ASN][1000 genomes]
rs10092935	1.00[ASN][1000 genomes]
rs10100399	1.00[ASN][1000 genomes]
rs10104556	1.00[ASN][1000 genomes]
rs13438922	1.00[ASN][1000 genomes]
rs13439208	1.00[ASN][1000 genomes]
rs13439470	1.00[ASN][1000 genomes]
rs16929105	1.00[ASN][1000 genomes]
rs28451590	1.00[ASN][1000 genomes]
rs28485927	1.00[ASN][1000 genomes]
rs28544494	1.00[ASN][1000 genomes]
rs28547361	1.00[ASN][1000 genomes]
rs28564421	1.00[ASN][1000 genomes]
rs28645735	1.00[ASN][1000 genomes]
rs28647803	1.00[ASN][1000 genomes]
rs28713340	1.00[ASN][1000 genomes]
rs28728294	1.00[ASN][1000 genomes]
rs56200385	1.00[ASN][1000 genomes]
rs6981632	1.00[ASN][1000 genomes]
rs7001999	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63428800-63443600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63432000-63437200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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