Variant report

Variant	rs28449533
Chromosome Location	chr15:53153240-53153241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12232305	0.83[ASN][1000 genomes]
rs16965222	0.87[ASN][1000 genomes]
rs17709181	0.97[ASN][1000 genomes]
rs2120440	0.80[ASN][1000 genomes]
rs2120441	0.97[ASN][1000 genomes]
rs2456509	0.93[ASN][1000 genomes]
rs2456510	0.90[ASN][1000 genomes]
rs28415452	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28489650	0.83[ASN][1000 genomes]
rs28556805	0.93[ASN][1000 genomes]
rs28566485	0.82[ASN][1000 genomes]
rs28713382	0.97[ASN][1000 genomes]
rs56346629	0.82[ASN][1000 genomes]
rs58028943	0.80[ASN][1000 genomes]
rs61364465	0.82[ASN][1000 genomes]
rs6493586	0.93[ASN][1000 genomes]
rs7176412	0.82[ASN][1000 genomes]
rs731607	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53151200-53154600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr15:53151400-53159000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links