Variant report

Variant	rs28449962
Chromosome Location	chr6:13190519-13190520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13182449..13185270-chr6:13189938..13191511,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112137	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1150606	0.84[AFR][1000 genomes]
rs28451621	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9473641	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9473643	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3326413	chr6:13185696-13191025	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:13178800-13191400	Weak transcription	Left Ventricle	heart
4	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:13181600-13190600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:13182000-13205400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
8	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
10	chr6:13182200-13192800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:13183000-13195200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:13183000-13207000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:13184000-13190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
15	chr6:13184200-13197000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:13185000-13191600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:13185000-13202800	Weak transcription	Brain Anterior Caudate	brain
18	chr6:13185200-13191400	Weak transcription	Right Ventricle	heart
19	chr6:13185200-13204000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:13185200-13205200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:13185400-13192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:13185400-13204800	Weak transcription	Lung	lung
23	chr6:13185400-13205800	Weak transcription	Aorta	Aorta
24	chr6:13185400-13205800	Weak transcription	Pancreas	Pancrea
25	chr6:13185800-13191600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
27	chr6:13187600-13191200	Weak transcription	Fetal Heart	heart
28	chr6:13187800-13192600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:13189200-13190600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:13189400-13196000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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