Variant report

Variant	rs28454015
Chromosome Location	chr4:79481184-79481185
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79480977..79482887-chr4:79485454..79487082,2	MCF-7	breast:
2	chr4:79442586..79444586-chr4:79481129..79483159,2	K562	blood:
3	chr4:79463825..79467444-chr4:79478158..79482300,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10018015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6533779	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7660496	1.00[AMR][1000 genomes]
rs7682725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79473400-79481400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:79473400-79481400	Weak transcription	HSMM	muscle
3	chr4:79473400-79481600	Weak transcription	Gastric	stomach
4	chr4:79473400-79481600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:79473400-79485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:79473600-79481400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:79473600-79481600	Weak transcription	Pancreas	Pancrea
8	chr4:79473600-79481800	Weak transcription	Small Intestine	intestine
9	chr4:79473600-79487200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:79473800-79481400	Weak transcription	Aorta	Aorta
11	chr4:79474000-79482200	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:79474400-79481400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:79474400-79481400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:79474400-79481800	Weak transcription	Esophagus	oesophagus
15	chr4:79474400-79486600	Weak transcription	Psoas Muscle	Psoas
16	chr4:79474400-79527200	Weak transcription	Spleen	Spleen
17	chr4:79474600-79481400	Weak transcription	Fetal Stomach	stomach
18	chr4:79474600-79481800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:79474600-79482400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:79474600-79488200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:79474800-79481600	Weak transcription	K562	blood
22	chr4:79475000-79481400	Weak transcription	Fetal Heart	heart
23	chr4:79475000-79481600	Weak transcription	Placenta	Placenta
24	chr4:79475200-79481600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:79475200-79481600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:79475200-79481600	Weak transcription	Lung	lung
27	chr4:79475400-79481200	Weak transcription	NH-A	brain
28	chr4:79475400-79481600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:79475600-79481400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr4:79475600-79481400	Weak transcription	HSMMtube	muscle
31	chr4:79475600-79482200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:79475600-79483800	Genic enhancers	HMEC	breast
33	chr4:79476800-79486600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:79477200-79483000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr4:79478400-79483600	Enhancers	HUVEC	blood vessel
36	chr4:79478800-79481400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:79478800-79481400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr4:79478800-79482600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:79478800-79484200	Genic enhancers	NHEK	skin
40	chr4:79478800-79484800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
41	chr4:79478800-79489800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:79479400-79481400	Weak transcription	Osteobl	bone
43	chr4:79479600-79481800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:79479800-79481400	Weak transcription	Stomach Mucosa	stomach
45	chr4:79479800-79481600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr4:79479800-79481600	Weak transcription	Fetal Lung	lung
47	chr4:79480000-79481400	Weak transcription	A549	lung
48	chr4:79480000-79484200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:79480200-79481400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:79480200-79481400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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