Variant report

Variant	rs28459646
Chromosome Location	chr14:65763692-65763693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65763315..65764947-chr14:65767837..65770740,2	MCF-7	breast:
2	chr14:65763015..65765090-chr14:65776527..65778731,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258760	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10047886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131095	0.89[AFR][1000 genomes]
rs10132304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135430	0.89[AFR][1000 genomes]
rs10135555	0.89[AFR][1000 genomes]
rs10136600	0.89[AFR][1000 genomes]
rs10137961	0.89[AFR][1000 genomes]
rs10138521	0.89[AFR][1000 genomes]
rs10142126	0.89[AFR][1000 genomes]
rs10142520	0.89[AFR][1000 genomes]
rs10143378	0.89[AFR][1000 genomes]
rs10143537	0.89[AFR][1000 genomes]
rs10148449	0.89[AFR][1000 genomes]
rs10149224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150033	0.89[AFR][1000 genomes]
rs10150248	0.89[AFR][1000 genomes]
rs10150722	0.89[AFR][1000 genomes]
rs10151906	0.89[AFR][1000 genomes]
rs1679884	1.00[AMR][1000 genomes]
rs17102622	0.89[AFR][1000 genomes]
rs1871746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2152376	0.89[AFR][1000 genomes]
rs28425716	1.00[AMR][1000 genomes]
rs28438882	0.89[AFR][1000 genomes]
rs28462250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482071	0.89[AFR][1000 genomes]
rs28489429	0.89[AFR][1000 genomes]
rs28503629	1.00[AMR][1000 genomes]
rs28533687	1.00[AMR][1000 genomes]
rs28546829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28550810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583895	0.89[AFR][1000 genomes]
rs28591212	1.00[AMR][1000 genomes]
rs28649307	1.00[AMR][1000 genomes]
rs28649429	1.00[AMR][1000 genomes]
rs28654875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28708772	0.89[AFR][1000 genomes]
rs9323458	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65754600-65768600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65754800-65764400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:65758800-65764400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:65758800-65770000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:65758800-65773400	Weak transcription	Spleen	Spleen
6	chr14:65759000-65764600	Weak transcription	Colonic Mucosa	Colon
7	chr14:65759000-65766000	Weak transcription	Fetal Thymus	thymus
8	chr14:65759000-65766000	Weak transcription	Thymus	Thymus
9	chr14:65759800-65766000	Weak transcription	Primary T cells from cord blood	blood
10	chr14:65759800-65766200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:65760000-65781000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:65763200-65763800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr14:65763200-65764600	Enhancers	HepG2	liver
14	chr14:65763200-65774200	Enhancers	Primary B cells from peripheral blood	blood
15	chr14:65763400-65763800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr14:65763600-65763800	Enhancers	GM12878-XiMat	blood
17	chr14:65763600-65764200	Enhancers	Pancreas	Pancrea
18	chr14:65763600-65765600	Enhancers	Stomach Mucosa	stomach

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