Variant report

Variant	rs2846043
Chromosome Location	chr11:57031127-57031128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12296071	1.00[AMR][1000 genomes]
rs1262323	1.00[AMR][1000 genomes]
rs2508769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2508771	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2511025	0.91[AFR][1000 genomes]
rs2846040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846045	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846046	0.87[AFR][1000 genomes]
rs2846047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2846048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2851723	0.91[AFR][1000 genomes]
rs2851724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs481516	1.00[AMR][1000 genomes]
rs499885	0.87[AFR][1000 genomes]
rs501160	1.00[AMR][1000 genomes]
rs546403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs558266	0.91[AFR][1000 genomes]
rs559168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs578831	0.87[AFR][1000 genomes]
rs639248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs641550	1.00[AMR][1000 genomes]
rs652353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs655402	0.87[AFR][1000 genomes]
rs656366	0.91[AFR][1000 genomes]
rs670919	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57029400-57031600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr11:57029400-57031600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:57030400-57031400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:57030400-57031600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:57030600-57031200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:57030600-57036800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:57030800-57031200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr11:57030800-57031200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:57030800-57031600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:57030800-57031600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:57031000-57031400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:57031000-57032800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:57031000-57037200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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