Variant report

Variant	rs2846072
Chromosome Location	chr11:75980525-75980526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75979986..75982924-chr11:75983377..75985571,2	MCF-7	breast:
2	chr11:75972189..75974283-chr11:75977968..75980667,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs639015	0.80[ASN][1000 genomes]
rs653384	0.86[ASN][1000 genomes]
rs664675	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1040118	chr11:75870189-75995089	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1053129	chr11:75871240-75997663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3431387	chr11:75977704-75981402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75962600-75983600	Weak transcription	Spleen	Spleen
2	chr11:75976000-75982600	Enhancers	Adipose Nuclei	Adipose
3	chr11:75978000-75981200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:75978200-75981000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:75978600-75981200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:75979400-75981000	Weak transcription	Fetal Brain Male	brain
7	chr11:75979400-75981600	Weak transcription	Fetal Brain Female	brain
8	chr11:75979600-75980600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:75979800-75982200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:75979800-75982600	Enhancers	Liver	Liver
11	chr11:75980000-75980600	Enhancers	Lung	lung
12	chr11:75980000-75981400	Enhancers	Right Atrium	heart
13	chr11:75980000-75981600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:75980000-75982800	Enhancers	Fetal Lung	lung
15	chr11:75980200-75980600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:75980200-75981600	Enhancers	Placenta	Placenta
17	chr11:75980200-75982400	Enhancers	Fetal Stomach	stomach
18	chr11:75980200-75982600	Enhancers	Fetal Muscle Leg	muscle
19	chr11:75980200-75982800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:75980200-75982800	Enhancers	Fetal Muscle Trunk	muscle
21	chr11:75980200-75983400	Flanking Active TSS	Hela-S3	cervix
22	chr11:75980400-75980800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:75980400-75981200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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