Variant report

Variant	rs28465113
Chromosome Location	chr7:104492686-104492687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10085831	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10258340	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28526655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4073643	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4144809	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57624778	0.82[EUR][1000 genomes]
rs59449150	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6944796	0.85[EUR][1000 genomes]
rs71562617	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73184012	0.97[EUR][1000 genomes]
rs73184014	0.81[EUR][1000 genomes]
rs73184016	0.82[EUR][1000 genomes]
rs73184018	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
3	chr7:104483600-104493000	Weak transcription	Pancreas	Pancrea
4	chr7:104486200-104492800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:104489000-104493400	Weak transcription	Fetal Intestine Large	intestine
6	chr7:104489000-104493800	Weak transcription	Fetal Brain Male	brain
7	chr7:104489000-104494400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:104491400-104493400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:104491400-104493400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:104491600-104493600	Enhancers	Adipose Nuclei	Adipose
11	chr7:104491800-104493000	Weak transcription	GM12878-XiMat	blood
12	chr7:104492200-104493200	Strong transcription	Fetal Intestine Small	intestine
13	chr7:104492400-104493400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:104492400-104493800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:104492400-104493800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:104492600-104493000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:104492600-104493600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:104492600-104493800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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