Variant report

Variant	rs28465145
Chromosome Location	chr14:65773252-65773253
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12100604	1.00[EUR][1000 genomes]
rs12100674	1.00[EUR][1000 genomes]
rs17102582	1.00[EUR][1000 genomes]
rs17102614	1.00[EUR][1000 genomes]
rs17102621	1.00[EUR][1000 genomes]
rs17102690	1.00[EUR][1000 genomes]
rs56966413	1.00[EUR][1000 genomes]
rs59324651	1.00[EUR][1000 genomes]
rs60514832	1.00[EUR][1000 genomes]
rs61004469	1.00[EUR][1000 genomes]
rs7154681	1.00[EUR][1000 genomes]
rs8010623	1.00[EUR][1000 genomes]
rs8012057	1.00[EUR][1000 genomes]
rs8014977	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65758800-65773400	Weak transcription	Spleen	Spleen
2	chr14:65760000-65781000	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65763200-65774200	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:65768600-65773600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:65769200-65782400	Weak transcription	Gastric	stomach
6	chr14:65769400-65783600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:65771200-65773400	Weak transcription	Fetal Intestine Small	intestine
8	chr14:65771200-65782400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:65772400-65778600	Weak transcription	Stomach Mucosa	stomach
10	chr14:65772400-65787800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:65772800-65781000	Weak transcription	Primary T cells from cord blood	blood
12	chr14:65773200-65773400	Flanking Active TSS	GM12878-XiMat	blood
13	chr14:65773200-65774400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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