Variant report

Variant	rs28465245
Chromosome Location	chr4:142044858-142044859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10001083	0.88[AFR][1000 genomes]
rs10029462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435113	0.81[AFR][1000 genomes]
rs13435125	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28372551	0.88[AFR][1000 genomes]
rs28417061	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28433132	0.81[AFR][1000 genomes]
rs28438876	1.00[AFR][1000 genomes]
rs28457672	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28612386	0.81[AFR][1000 genomes]
rs28628800	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142038600-142052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:142039000-142049200	Weak transcription	Fetal Brain Female	brain
3	chr4:142039400-142051800	Weak transcription	Aorta	Aorta
4	chr4:142039800-142045000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:142039800-142045200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:142039800-142045200	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:142041000-142047600	Weak transcription	Spleen	Spleen
8	chr4:142041000-142048600	Weak transcription	Adipose Nuclei	Adipose
9	chr4:142041000-142052200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:142042200-142047400	Weak transcription	Psoas Muscle	Psoas
11	chr4:142042200-142048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:142042600-142045200	Weak transcription	Ovary	ovary
13	chr4:142042600-142048600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:142042800-142046400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:142042800-142047400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:142043400-142047200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:142043600-142045400	Weak transcription	Right Atrium	heart
18	chr4:142043600-142047000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:142043600-142047400	Weak transcription	Right Ventricle	heart
20	chr4:142043600-142047600	Weak transcription	Fetal Stomach	stomach
21	chr4:142043600-142051800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:142043800-142045400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr4:142043800-142045600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:142043800-142047400	Weak transcription	Left Ventricle	heart
25	chr4:142044400-142045000	Weak transcription	Fetal Heart	heart
26	chr4:142044400-142051200	Weak transcription	Osteobl	bone
27	chr4:142044600-142046600	Weak transcription	Colon Smooth Muscle	Colon
28	chr4:142044600-142047600	Weak transcription	Pancreas	Pancrea
29	chr4:142044600-142051600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr4:142044800-142051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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