Variant report

Variant	rs28482071
Chromosome Location	chr14:65966940-65966941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65964884..65967338-chr14:65969544..65973454,5	MCF-7	breast:
2	chr14:65963092..65965486-chr14:65966125..65968335,2	MCF-7	breast:
3	chr14:65964882..65967271-chr14:65968694..65970645,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10047886	0.89[AFR][1000 genomes]
rs10129221	1.00[AMR][1000 genomes]
rs10129828	1.00[AMR][1000 genomes]
rs10130270	0.85[AFR][1000 genomes]
rs10131095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131616	1.00[AMR][1000 genomes]
rs10132304	0.89[AFR][1000 genomes]
rs10132575	1.00[AMR][1000 genomes]
rs10135430	1.00[AFR][1000 genomes]
rs10135555	1.00[AFR][1000 genomes]
rs10136600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137961	1.00[AFR][1000 genomes]
rs10138521	1.00[AFR][1000 genomes]
rs10138881	1.00[AMR][1000 genomes]
rs10139190	1.00[AMR][1000 genomes]
rs10140494	1.00[AMR][1000 genomes]
rs10142126	1.00[AFR][1000 genomes]
rs10142520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143537	1.00[AFR][1000 genomes]
rs10143944	1.00[AMR][1000 genomes]
rs10144478	1.00[AMR][1000 genomes]
rs10146510	1.00[AMR][1000 genomes]
rs10148449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149224	1.00[AFR][1000 genomes]
rs10150033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150248	1.00[AFR][1000 genomes]
rs10150722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151906	1.00[AFR][1000 genomes]
rs10162357	1.00[AMR][1000 genomes]
rs10162579	1.00[AMR][1000 genomes]
rs17102622	1.00[AFR][1000 genomes]
rs17102765	1.00[AMR][1000 genomes]
rs17102767	1.00[AMR][1000 genomes]
rs17102769	1.00[AMR][1000 genomes]
rs1871746	0.89[AFR][1000 genomes]
rs2152376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370375	1.00[AMR][1000 genomes]
rs28375638	1.00[AMR][1000 genomes]
rs28438882	1.00[AFR][1000 genomes]
rs28459646	0.89[AFR][1000 genomes]
rs28462250	0.89[AFR][1000 genomes]
rs28489429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28546829	0.89[AFR][1000 genomes]
rs28550810	0.89[AFR][1000 genomes]
rs28583895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28612256	1.00[AMR][1000 genomes]
rs28654875	0.89[AFR][1000 genomes]
rs28708772	1.00[AFR][1000 genomes]
rs28716649	1.00[AMR][1000 genomes]
rs28789146	1.00[AMR][1000 genomes]
rs28808288	1.00[AMR][1000 genomes]
rs28864090	1.00[AMR][1000 genomes]
rs28890806	1.00[AMR][1000 genomes]
rs57330939	1.00[AMR][1000 genomes]
rs73286159	1.00[AMR][1000 genomes]
rs9323458	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65939000-65969400	Weak transcription	Dnd41	blood
2	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:65949600-65970200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:65950000-65969400	Weak transcription	NH-A	brain
5	chr14:65950000-65973400	Weak transcription	Gastric	stomach
6	chr14:65953800-65970600	Weak transcription	Stomach Mucosa	stomach
7	chr14:65957600-65967800	Weak transcription	Small Intestine	intestine
8	chr14:65960600-65967800	Weak transcription	Brain Substantia Nigra	brain
9	chr14:65962200-65969400	Weak transcription	Osteobl	bone
10	chr14:65962200-65969600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:65963600-65973800	Weak transcription	Primary B cells from cord blood	blood
12	chr14:65963600-65975000	Weak transcription	Fetal Intestine Small	intestine
13	chr14:65963600-65975800	Weak transcription	Primary T cells from cord blood	blood
14	chr14:65963600-65994400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:65963800-65967800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr14:65963800-65968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:65964800-65969400	Enhancers	GM12878-XiMat	blood
18	chr14:65965000-65967400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr14:65965000-65968000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:65965000-65973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:65965400-65969600	Weak transcription	Brain Anterior Caudate	brain
22	chr14:65965600-65967000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:65965600-65969600	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:65965600-65969800	Weak transcription	Colon Smooth Muscle	Colon
25	chr14:65965800-65969800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:65966000-65969400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:65966000-65969400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:65966800-65967600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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